Factsheet for TraesCS2B01G262400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G242600.1	Wheat	plasma membrane	99.8	99.8
TraesCS2A01G244800.1	Wheat	plasma membrane	99.8	99.8
HORVU2Hr1G052430.2	Barley	cytosol	61.61	88.67
Os07t0409100-01	Rice	plasma membrane	89.17	87.96
EER96263	Sorghum	mitochondrion, plasma membrane	86.42	86.42
Zm00001d019472_P005	Maize	endoplasmic reticulum, mitochondrion, plasma membrane	83.66	79.44
GSMUA_Achr2P12230_001	Banana	endoplasmic reticulum, mitochondrion	74.02	75.35
KRH48321	Soybean	endoplasmic reticulum, mitochondrion	73.43	71.18
VIT_15s0048g01410.t01	Wine grape	endoplasmic reticulum, extracellular	71.46	70.76
KRH65210	Soybean	endoplasmic reticulum, mitochondrion	73.62	69.91
PGSC0003DMT400035570	Potato	cytosol	51.18	69.52
Bra014457.1-P	Field mustard	endoplasmic reticulum, extracellular	67.72	68.12
Solyc10g017590.2.1	Tomato	mitochondrion	63.39	67.79
AT3G61050.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	67.91	67.65
GSMUA_Achr5P04070_001	Banana	endoplasmic reticulum, mitochondrion	71.26	67.41
Bra003434.1-P	Field mustard	endoplasmic reticulum, extracellular	66.93	67.33
CDY45675	Canola	endoplasmic reticulum, extracellular	66.93	67.33
Solyc01g094030.2.1	Tomato	plastid	66.93	67.33
CDY42483	Canola	endoplasmic reticulum, extracellular	62.8	67.3
CDX89094	Canola	endoplasmic reticulum, extracellular, plasma membrane	62.8	67.3
Solyc05g047710.2.1	Tomato	endoplasmic reticulum, mitochondrion	65.55	67.27
PGSC0003DMT400026606	Potato	cytosol, endoplasmic reticulum, mitochondrion, plastid	63.39	66.81
CDX67848	Canola	endoplasmic reticulum, extracellular, plasma membrane	62.2	66.67
KRH40562	Soybean	endoplasmic reticulum	69.88	66.36
KRH00619	Soybean	mitochondrion, plasma membrane	69.69	64.95
TraesCS4B01G222600.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	64.57	64.44
Solyc10g052520.1.1	Tomato	endoplasmic reticulum, extracellular	31.5	62.26
KRH55269	Soybean	cytosol, plasma membrane	31.1	60.31
AT3G61030.1	Thale cress	mitochondrion	41.34	41.26
AT3G60950.1	Thale cress	mitochondrion	42.13	34.13
TraesCS2B01G545700.3	Wheat	endoplasmic reticulum, extracellular, plastid	36.02	32.11
TraesCS5B01G330600.1	Wheat	endoplasmic reticulum	26.18	24.05
TraesCS5B01G330500.1	Wheat	cytosol	13.39	23.13
TraesCS7B01G347000.3	Wheat	extracellular, golgi	24.21	21.32

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:CLB_plant	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	InterPro:IPR000008	InterPro:IPR031468
InterPro:IPR035892	PFAM:PF00168	PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847
PANTHER:PTHR10774	PANTHER:PTHR10774:SF51	SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2B01G262400	EnsemblPlants:TraesCS2B01G262400.1	TIGR:cd00030	SEG:seg	:

Description

No Description!

Coordinates

chr2B:-:342253058..342305440

Molecular Weight (calculated)

54986.0 Da

IEP (calculated)

8.575

GRAVY (calculated)

-0.013

Length

508 amino acids

Sequence
(BLAST)

001: MGFISGVVMG LVVGVVIMAG WSRVMQRRSR KRVAKAADIK VLGSLGREDL KKLCGDNFPE WISFPQYEQV KWLNKHLSKL WPFVSQAATA VVKESVEPLL
101: DDYRPPGIKS LKFNKFSLGN VSPKIEGIRI QNLQPGQIIM DIDFRWGGDP SIILAVDARV ASLPIQLKDL QVFTVVRVVF QLSEEIPCIS AVVVALLAEP
201: EPKIQYTLKA VGGSLTAIPG LSDMIDDTVN SIVNDMLQWP HRLVVPLGVN VDTSELELKP EGKLSVTVVK ATSLKNKELI GKSDPYVTLY VRPMFKVKTK
301: VIDDNLNPEW NETFELIVED KETQSVIFEV YDEDNLQQDK RLGVAKLAVN NIVPETPSEI TLKLMQSVDS LKIKDYRDRG SLHLKVMYHP FTKEEQLEAL
401: ESEKKAIEER KRLKEAGVIG STMDALGGAA SLVGSGVGFV GTGVAGGVGL VGSGLGAGAG LVGSGIGAVG SGLGKAGKFM GRTVTGHLGM SRKSGSSSTV
501: PQPDQPSA

Best Arabidopsis Sequence Match ( AT3G61050.1 )
(BLAST)

001: MGLISGILFG IIFGVALMAG WSRMMTHRSS KRVAKAVDMK LLGSLSRDDL KKICGDNFPQ WISFPAFEQV KWLNKLLSKM WPYIAEAATM VIRDSVEPLL
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ

Arabidopsis Description

NTMC2TYPE4At3g61050 [Source:UniProtKB/TrEMBL;Acc:Q9LEX1]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.