Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
26371478
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g052520.1.1 | Tomato | endoplasmic reticulum, extracellular | 42.57 | 83.66 |
| Solyc05g047710.2.1 | Tomato | endoplasmic reticulum, mitochondrion | 81.98 | 83.64 |
| VIT_15s0048g01410.t01 | Wine grape | endoplasmic reticulum, extracellular | 83.17 | 81.87 |
| Solyc10g017590.2.1 | Tomato | mitochondrion | 74.46 | 79.16 |
| AT3G61050.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 77.03 | 76.27 |
| CDX67848 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 71.49 | 76.16 |
| CDX89094 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 71.49 | 76.16 |
| Bra014457.1-P | Field mustard | endoplasmic reticulum, extracellular | 76.04 | 76.04 |
| KRH48321 | Soybean | endoplasmic reticulum, mitochondrion | 78.81 | 75.95 |
| Bra003434.1-P | Field mustard | endoplasmic reticulum, extracellular | 75.84 | 75.84 |
| CDY42483 | Canola | endoplasmic reticulum, extracellular | 71.09 | 75.74 |
| CDY45675 | Canola | endoplasmic reticulum, extracellular | 75.45 | 75.45 |
| KRH65210 | Soybean | endoplasmic reticulum, mitochondrion | 79.01 | 74.58 |
| KRH40562 | Soybean | endoplasmic reticulum | 77.62 | 73.27 |
| KRH00619 | Soybean | mitochondrion, plasma membrane | 78.42 | 72.66 |
| GSMUA_Achr2P12230_001 | Banana | endoplasmic reticulum, mitochondrion | 71.68 | 72.55 |
| KRH55269 | Soybean | cytosol, plasma membrane | 35.25 | 67.94 |
| TraesCS2B01G262400.1 | Wheat | plasma membrane | 67.33 | 66.93 |
| TraesCS2A01G244800.1 | Wheat | plasma membrane | 67.33 | 66.93 |
| Os07t0409100-01 | Rice | plasma membrane | 68.12 | 66.8 |
| EER96263 | Sorghum | mitochondrion, plasma membrane | 67.13 | 66.73 |
| TraesCS2D01G242600.1 | Wheat | plasma membrane | 67.13 | 66.73 |
| GSMUA_Achr5P04070_001 | Banana | endoplasmic reticulum, mitochondrion | 69.11 | 64.99 |
| EER93061 | Sorghum | endoplasmic reticulum, mitochondrion | 63.37 | 63.49 |
| Zm00001d019472_P005 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane | 66.53 | 62.8 |
| EER92549 | Sorghum | endoplasmic reticulum, extracellular | 62.77 | 62.04 |
| Zm00001d028437_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 62.38 | 60.69 |
| TraesCS4B01G222600.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 60.99 | 60.51 |
| TraesCS4D01G223100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 61.39 | 60.19 |
| TraesCS4A01G081200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 60.59 | 59.42 |
| HORVU4Hr1G062820.2 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 59.6 | 58.79 |
| HORVU2Hr1G052430.2 | Barley | cytosol | 40.99 | 58.64 |
| Os03t0251600-00 | Rice | plasma membrane | 60.99 | 58.33 |
| AT3G61030.1 | Thale cress | mitochondrion | 43.96 | 43.61 |
| AT3G60950.1 | Thale cress | mitochondrion | 45.74 | 36.84 |
| Solyc08g021940.1.1 | Tomato | extracellular, plasma membrane | 20.0 | 35.44 |
| Solyc12g009760.1.1 | Tomato | extracellular | 8.51 | 34.68 |
| Solyc12g009790.1.1 | Tomato | endoplasmic reticulum | 35.25 | 31.5 |
| Solyc07g007680.2.1 | Tomato | plastid | 35.05 | 31.49 |
| Solyc12g009700.1.1 | Tomato | extracellular, plasma membrane | 16.83 | 27.78 |
| Solyc09g007860.2.1 | Tomato | endoplasmic reticulum | 26.53 | 24.59 |
| Solyc12g089330.1.1 | Tomato | endoplasmic reticulum, extracellular | 25.35 | 24.38 |
| Solyc01g111520.2.1 | Tomato | nucleus | 25.94 | 24.3 |
Protein Annotations
| Gene3D:2.60.40.150 | MapMan:35.1 | EMBL:AB001389 | InterPro:C2_dom | InterPro:C2_domain_sf | InterPro:CLB_plant |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006810 | GO:GO:0006869 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000008 | InterPro:IPR031468 | InterPro:IPR035892 | UniProt:O48645 |
| PFAM:PF00168 | PFAM:PF17047 | PFscan:PS50004 | PFscan:PS51847 | PANTHER:PTHR10774 | PANTHER:PTHR10774:SF51 |
| SMART:SM00239 | InterPro:SMP_LBD | SUPFAM:SSF49562 | EnsemblPlantsGene:Solyc01g094030.2 | EnsemblPlants:Solyc01g094030.2.1 | InterPro:Synaptotagmin_SMP |
| TMHMM:TMhelix | UniParc:UPI00000A6464 | SEG:seg | : | : | : |
Description
CLB1 [Source:UniProtKB/TrEMBL;Acc:O48645]
Coordinates
chr1:-:85597739..85610093
Molecular Weight (calculated)
54637.2 Da
IEP (calculated)
8.659
GRAVY (calculated)
0.029
Length
505 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLISGILMG MICGIGLMAV WKHMTRYRSN KRIAKAVDVK VMGCLCRDDL KKVCGDNFPE WISFPVYEQV KWLNKQLSKL WPSIAEAGEA IIKESVEPLL
101: EDYRPPGITS LKFSKLSLGT VAPKIEGIRV QSLKKGQITM DIDLRWGGDP NIVLGVEAAM VASIPIQLKN LQVFTVIRVI FQLTEEIPCI SAVVVALLSE
201: PKPRIDYVLK AVGGSLTALP GLSDMIDDTV NTIVTDMLEW PHRIVVPIAP VDTSDLELKP QGKLTVTIVK ANGLKNHEMI GKSDPYAVVH IRPLFKVKTK
301: TIDNNLNPVW DQTFELIAED KETQSLFIEV FDKDNIGQDQ RMGVAKLPLN ELVADAAKEI ELRLLPKLDM LKVKDKKDRG TITIKVLYHE FNKEEQLAAL
401: EAEKAILEER KKLKAEGVIG STMDAVGSGV GMVGSGIGAG VGLVGTGLGA GVGIVGSGFG AVGSGLSKAG KFMGRTFTGS SKKNGSSTPV NSVQENGGAK
501: PLKSE
101: EDYRPPGITS LKFSKLSLGT VAPKIEGIRV QSLKKGQITM DIDLRWGGDP NIVLGVEAAM VASIPIQLKN LQVFTVIRVI FQLTEEIPCI SAVVVALLSE
201: PKPRIDYVLK AVGGSLTALP GLSDMIDDTV NTIVTDMLEW PHRIVVPIAP VDTSDLELKP QGKLTVTIVK ANGLKNHEMI GKSDPYAVVH IRPLFKVKTK
301: TIDNNLNPVW DQTFELIAED KETQSLFIEV FDKDNIGQDQ RMGVAKLPLN ELVADAAKEI ELRLLPKLDM LKVKDKKDRG TITIKVLYHE FNKEEQLAAL
401: EAEKAILEER KKLKAEGVIG STMDAVGSGV GMVGSGIGAG VGLVGTGLGA GVGIVGSGFG AVGSGLSKAG KFMGRTFTGS SKKNGSSTPV NSVQENGGAK
501: PLKSE
001: MGLISGILFG IIFGVALMAG WSRMMTHRSS KRVAKAVDMK LLGSLSRDDL KKICGDNFPQ WISFPAFEQV KWLNKLLSKM WPYIAEAATM VIRDSVEPLL
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ
Arabidopsis Description
NTMC2TYPE4At3g61050 [Source:UniProtKB/TrEMBL;Acc:Q9LEX1]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.