Factsheet for TraesCS4A01G081200.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G223100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	97.86	97.86
TraesCS4B01G222600.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	94.95	96.07
HORVU4Hr1G062820.2	Barley	endoplasmic reticulum, extracellular, plasma membrane	90.1	90.62
EER92549	Sorghum	endoplasmic reticulum, extracellular	80.0	80.63
Zm00001d028437_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	80.58	79.96
Os03t0251600-00	Rice	plasma membrane	77.48	75.57
GSMUA_Achr2P12230_001	Banana	endoplasmic reticulum, mitochondrion	63.5	65.53
KRH48321	Soybean	endoplasmic reticulum, mitochondrion	65.63	64.5
Bra014457.1-P	Field mustard	endoplasmic reticulum, extracellular	62.14	63.37
VIT_15s0048g01410.t01	Wine grape	endoplasmic reticulum, extracellular	63.11	63.35
CDY42483	Canola	endoplasmic reticulum, extracellular	58.25	63.29
Bra003434.1-P	Field mustard	endoplasmic reticulum, extracellular	61.94	63.17
CDX89094	Canola	endoplasmic reticulum, extracellular, plasma membrane	58.06	63.08
TraesCS2A01G244800.1	Wheat	plasma membrane	62.14	62.99
CDY45675	Canola	endoplasmic reticulum, extracellular	61.75	62.97
CDX67848	Canola	endoplasmic reticulum, extracellular, plasma membrane	57.86	62.87
KRH40562	Soybean	endoplasmic reticulum	65.24	62.8
AT3G61050.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	62.14	62.75
KRH65210	Soybean	endoplasmic reticulum, mitochondrion	65.05	62.62
KRH00619	Soybean	mitochondrion, plasma membrane	65.44	61.83
Solyc10g017590.2.1	Tomato	mitochondrion	56.12	60.84
Solyc05g047710.2.1	Tomato	endoplasmic reticulum, mitochondrion	58.25	60.61
Solyc01g094030.2.1	Tomato	plastid	59.42	60.59
PGSC0003DMT400026606	Potato	cytosol, endoplasmic reticulum, mitochondrion, plastid	56.31	60.17
GSMUA_Achr5P04070_001	Banana	endoplasmic reticulum, mitochondrion	62.72	60.15
PGSC0003DMT400035570	Potato	cytosol	42.91	59.09
Solyc10g052520.1.1	Tomato	endoplasmic reticulum, extracellular	27.57	55.25
KRH55269	Soybean	cytosol, plasma membrane	25.83	50.76
AT3G61030.1	Thale cress	mitochondrion	37.28	37.72
TraesCS6A01G098900.2	Wheat	endoplasmic reticulum, extracellular	34.95	32.03
AT3G60950.1	Thale cress	mitochondrion	37.48	30.78
TraesCS2A01G517200.1	Wheat	endoplasmic reticulum, extracellular, plastid	32.23	29.12
TraesCS7A01G447300.1	Wheat	extracellular, vacuole	25.83	24.68
TraesCS5A01G330400.1	Wheat	golgi	25.24	24.12

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0008289	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	PFAM:PF00168
PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF166
SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4A01G081200
EnsemblPlants:TraesCS4A01G081200.1	TIGR:cd00030	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:-:84367239..84370422

Molecular Weight (calculated)

56350.5 Da

IEP (calculated)

6.972

GRAVY (calculated)

0.003

Length

515 amino acids

Sequence
(BLAST)

001: MGFFSGIMLG FILGVALIAG WARAMARRAH KRSAKAADVN VLGSLNREDL KKICGENLPQ WISFPEYDQV KWLNRQLSKL WPFVEEAATM VIRDSVEPIL
101: DVYRPVGISA LKFSRLSLGT VPPKIEGIRV QSFQKGQITM DIDFKWGGDP NIVLAVETLV ASLPIQFKNL QVFTIIRVVF QLSDEIPCIS AVVIALLAEP
201: KPRIDYILKA VGGSLTAMPG LSDMIDDTVA SLITDMLQWP HRIVVPLGVD VDISDLELKP HGKVTVTVVR GESLKNKEFI GKSDPYVVLF IRPMFKERTR
301: VIDDNLNPEW NETFELIAED KETQHIILEV FDEDSLKQDK RLGIVKLPLS DLEVETVQEI NLQLLSSLDT TKVKDKKDRG VLTVRVLYHL YTKEEALRAL
401: ELEKRTVEER LKTREATGPA VSGSADAARG VAAPSTVTTN VAGTGVAVGA AVTGSGVHKD GSGVHKDGPG VHMVGTGIDA VGKSITKAGK FVGRTVTGPF
501: SSQRRSAASV PTIDE

Best Arabidopsis Sequence Match ( AT3G61050.1 )
(BLAST)

001: MGLISGILFG IIFGVALMAG WSRMMTHRSS KRVAKAVDMK LLGSLSRDDL KKICGDNFPQ WISFPAFEQV KWLNKLLSKM WPYIAEAATM VIRDSVEPLL
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ

Arabidopsis Description

NTMC2TYPE4At3g61050 [Source:UniProtKB/TrEMBL;Acc:Q9LEX1]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.