Factsheet for PGSC0003DMT400026606

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g017590.2.1	Tomato	mitochondrion	95.64	97.05
PGSC0003DMT400035570	Potato	cytosol	57.05	73.53
VIT_15s0048g01410.t01	Wine grape	endoplasmic reticulum, extracellular	76.56	71.93
KRH48321	Soybean	endoplasmic reticulum, mitochondrion	73.24	67.37
GSMUA_Achr2P12230_001	Banana	endoplasmic reticulum, mitochondrion	69.5	67.13
AT3G61050.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	70.54	66.67
KRH65210	Soybean	endoplasmic reticulum, mitochondrion	73.86	66.54
Bra014457.1-P	Field mustard	endoplasmic reticulum, extracellular	69.71	66.53
KRH40562	Soybean	endoplasmic reticulum	73.65	66.36
Bra003434.1-P	Field mustard	endoplasmic reticulum, extracellular	69.5	66.34
CDX89094	Canola	endoplasmic reticulum, extracellular, plasma membrane	65.15	66.24
CDX67848	Canola	endoplasmic reticulum, extracellular, plasma membrane	65.15	66.24
CDY45675	Canola	endoplasmic reticulum, extracellular	69.29	66.14
CDY42483	Canola	endoplasmic reticulum, extracellular	64.94	66.03
KRH00619	Soybean	mitochondrion, plasma membrane	74.27	65.69
TraesCS2A01G244800.1	Wheat	plasma membrane	66.81	63.39
TraesCS2B01G262400.1	Wheat	plasma membrane	66.81	63.39
TraesCS2D01G242600.1	Wheat	plasma membrane	66.6	63.19
EER96263	Sorghum	mitochondrion, plasma membrane	65.98	62.6
Os07t0409100-01	Rice	plasma membrane	66.81	62.52
GSMUA_Achr5P04070_001	Banana	endoplasmic reticulum, mitochondrion	68.46	61.45
EER93061	Sorghum	endoplasmic reticulum, mitochondrion	62.45	59.72
Zm00001d019472_P005	Maize	endoplasmic reticulum, mitochondrion, plasma membrane	65.35	58.88
EER92549	Sorghum	endoplasmic reticulum, extracellular	62.24	58.71
Zm00001d028437_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	61.62	57.23
TraesCS4B01G222600.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	59.75	56.58
TraesCS4D01G223100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	60.37	56.5
TraesCS4A01G081200.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	60.17	56.31
HORVU4Hr1G062820.2	Barley	endoplasmic reticulum, extracellular, plasma membrane	59.34	55.86
KRH55269	Soybean	cytosol, plasma membrane	30.29	55.73
Os03t0251600-00	Rice	plasma membrane	60.79	55.49
HORVU2Hr1G052430.2	Barley	cytosol	38.8	52.97
PGSC0003DMT400046490	Potato	cytosol	7.68	44.05
AT3G61030.1	Thale cress	mitochondrion	44.4	42.04
PGSC0003DMT400041534	Potato	cytosol	11.62	38.62
PGSC0003DMT400078829	Potato	extracellular, plasma membrane	19.71	36.82
AT3G60950.1	Thale cress	mitochondrion	44.81	34.45
PGSC0003DMT400054286	Potato	extracellular	4.56	31.43
PGSC0003DMT400068835	Potato	extracellular	4.56	31.43
PGSC0003DMT400036226	Potato	endoplasmic reticulum	35.48	30.98
PGSC0003DMT400020478	Potato	cytosol	25.52	28.87
PGSC0003DMT400015793	Potato	endoplasmic reticulum	28.01	25.05
PGSC0003DMT400055528	Potato	mitochondrion	27.59	24.4
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	26.76	23.93
PGSC0003DMT400078832	Potato	cytosol	11.83	21.51

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:CLB_plant	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139	GO:GO:0006355	GO:GO:0006810
GO:GO:0006869	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892
UniProt:M1ANF4	PFAM:PF00168	PFAM:PF17047	EnsemblPlantsGene:PGSC0003DMG400010278	PGSC:PGSC0003DMG400010278	EnsemblPlants:PGSC0003DMT400026606
PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF51	SMART:SM00239
InterPro:SMP_LBD	SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	UniParc:UPI000294B7C5	SEG:seg	:

Description

Calcium lipid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010278]

Coordinates

chr10:-:38725531..38730762

Molecular Weight (calculated)

53526.4 Da

IEP (calculated)

6.814

GRAVY (calculated)

-0.137

Length

482 amino acids

Sequence
(BLAST)

001: MGMIFGIGIM AGWQHMMRYR SRKRIAKAVD VKLMASLNRD DLKKICGDKF PEWISFPVFE QVKWLNKQLS KLWPFVADAG EAIIKDSVEP ILEDYRPPGI
101: SSLKFSKLSL GTVAPKIEGI RVQNLKKGQI IMDIDLRWGG DPNIVIEVDA VVASIPIQLK DLQVFTVIRV IFQLAEEIPC ISAVVVALLS EPKPRIDYTL
201: KAVGGSLTAL PGLSDMIEDT VDSIVTDMLE WPHRIVVPIG GIPVDTSDLE LKPQGKLTVT VMRATNLKNQ EMIGKSDPYV VVYIRPLFKF KTKTIDNNLN
301: PVWDETFELI AEDKETQSLL LEVFDEDIGE DDRMGVTKLP LNELQSDTPK EIELRLLPKY DMLKIKDKKD RGTITIKILY HEFNKKEQLA ALEEEKRVIE
401: ERKQLKAEGV IGSSMEALDG AAALAAGAAG SGIGAGLGAG VRVVRSGLNK TKKFMGRTFT GQSTNHKKSD SHSPPASVVH QD

Best Arabidopsis Sequence Match ( AT3G61050.1 )
(BLAST)

001: MGLISGILFG IIFGVALMAG WSRMMTHRSS KRVAKAVDMK LLGSLSRDDL KKICGDNFPQ WISFPAFEQV KWLNKLLSKM WPYIAEAATM VIRDSVEPLL
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ

Arabidopsis Description

NTMC2TYPE4At3g61050 [Source:UniProtKB/TrEMBL;Acc:Q9LEX1]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.