CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

cytosol 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96263	Sorghum	mitochondrion, plasma membrane	78.57	77.95
GSMUA_Achr2P12230_001	Banana	endoplasmic reticulum, mitochondrion	73.21	73.95
KRH48321	Soybean	endoplasmic reticulum, mitochondrion	70.04	67.37
VIT_15s0048g01410.t01	Wine grape	endoplasmic reticulum, extracellular	68.25	67.06
KRH65210	Soybean	endoplasmic reticulum, mitochondrion	70.44	66.36
GSMUA_Achr5P04070_001	Banana	endoplasmic reticulum, mitochondrion	69.44	65.18
Bra014457.1-P	Field mustard	endoplasmic reticulum, extracellular	65.08	64.95
CDY42483	Canola	endoplasmic reticulum, extracellular	60.91	64.77
CDX89094	Canola	endoplasmic reticulum, extracellular, plasma membrane	60.91	64.77
AT3G61050.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	65.28	64.51
Solyc05g047710.2.1	Tomato	endoplasmic reticulum, mitochondrion	63.29	64.44
Bra003434.1-P	Field mustard	endoplasmic reticulum, extracellular	64.29	64.16
KRH40562	Soybean	endoplasmic reticulum	68.06	64.11
Solyc10g017590.2.1	Tomato	mitochondrion	60.32	64.0
CDY45675	Canola	endoplasmic reticulum, extracellular	64.09	63.96
PGSC0003DMT400035570	Potato	cytosol	47.42	63.9
CDX67848	Canola	endoplasmic reticulum, extracellular, plasma membrane	59.92	63.71
Solyc01g094030.2.1	Tomato	plastid	63.49	63.37
KRH00619	Soybean	mitochondrion, plasma membrane	67.86	62.75
PGSC0003DMT400026606	Potato	cytosol, endoplasmic reticulum, mitochondrion, plastid	59.72	62.45
EER92549	Sorghum	endoplasmic reticulum, extracellular	61.71	60.86
Solyc10g052520.1.1	Tomato	endoplasmic reticulum, extracellular	29.56	57.98
KRH55269	Soybean	cytosol, plasma membrane	28.57	54.96
AT3G61030.1	Thale cress	mitochondrion	39.29	38.9
AT3G60950.1	Thale cress	mitochondrion	39.68	31.9
EES11541	Sorghum	extracellular, golgi	34.33	30.03
KXG36798	Sorghum	cytosol	29.76	29.94
EER99265	Sorghum	endoplasmic reticulum	26.39	24.68
OQU92056	Sorghum	endoplasmic reticulum	25.4	23.75
EER88839	Sorghum	endoplasmic reticulum, extracellular	25.2	23.69

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	UniProt:C5WRX5	InterPro:CLB_plant
ncoils:Coil	EnsemblPlants:EER93061	ProteinID:EER93061	ProteinID:EER93061.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006139
GO:GO:0006355	GO:GO:0006810	GO:GO:0006869	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008
InterPro:IPR031468	InterPro:IPR035892	PFAM:PF00168	PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004
PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF51	SMART:SM00239	InterPro:SMP_LBD	EnsemblPlantsGene:SORBI_3001G005100
SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI0001A827B6	RefSeq:XP_002466063.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:415997..419707

Molecular Weight (calculated)

55131.8 Da

IEP (calculated)

8.739

GRAVY (calculated)

0.042

Length

504 amino acids

Sequence
(BLAST)

001: MGLVSGMVAG LLLGVALMAA WSRMMRRRTA KRVAKAADIN ILGSLSRDDL KKLCGDNFPE WVSFQQFEQV KWLNKHLSKL WPFIAQAATL VVKESVEPLL
101: DDYRPPGIKS LKFSRFFLGN VPPKIEGIRI QNLQPGQIIM DIDFRWGGDP SIILAVDSIF ASLPIQLKDL QVFTVVRTIF QLSEEVPCIS TVVVALLAEP
201: KPKIQYTLKA VGGSLTAIPG LSDMIDDTVN SIVTDMLQWP HRIVVPLGVN VDTSEMELKP QGRLAVTVVK ATCLVNMEMI GKSDPYVVLY IRPMLKVKTK
301: VVDHNLNPEW NETFHLIVED KETQEVIFEI YDEDTLQQDK KMGVAKLAVN SLEPAESPTD ITLNVLQSLD SLKVKDNKGR GTLHLKVLYH PLTREEQMEA
401: MELEKKAMEE KKRLKEAGLI GSTMDALGGA ASLVGSGVVG GVGLVGSGIG AGVGLVGSGI GAVGSGLGKA GHFMGRTVTG SFSMPRKRDR LQQVTSRSHS
501: QIIT

Best Arabidopsis Sequence Match ( AT3G61050.1 )
(BLAST)

001: MGLISGILFG IIFGVALMAG WSRMMTHRSS KRVAKAVDMK LLGSLSRDDL KKICGDNFPQ WISFPAFEQV KWLNKLLSKM WPYIAEAATM VIRDSVEPLL
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ

Arabidopsis Description

NTMC2TYPE4At3g61050 [Source:UniProtKB/TrEMBL;Acc:Q9LEX1]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.