CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007034_P008	Maize	endoplasmic reticulum, extracellular, plasma membrane	95.81	81.77
TraesCS6A01G098900.2	Wheat	endoplasmic reticulum, extracellular	90.22	80.43
TraesCS6D01G083600.2	Wheat	endoplasmic reticulum, extracellular	90.22	80.43
HORVU6Hr1G017900.14	Barley	endoplasmic reticulum, extracellular, plasma membrane	90.02	77.09
EES11541	Sorghum	extracellular, golgi	69.06	60.07
EER92549	Sorghum	endoplasmic reticulum, extracellular	31.94	31.31
EER96263	Sorghum	mitochondrion, plasma membrane	31.74	31.3
EER93061	Sorghum	endoplasmic reticulum, mitochondrion	29.94	29.76
OQU92056	Sorghum	endoplasmic reticulum	30.34	28.2
EER99265	Sorghum	endoplasmic reticulum	29.34	27.27
EER88839	Sorghum	endoplasmic reticulum, extracellular	27.35	25.56

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	UniProt:A0A1B6QFU3	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0008289
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	EnsemblPlants:KXG36798
ProteinID:KXG36798	ProteinID:KXG36798.1	PFAM:PF00168	PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004
PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF166	SMART:SM00239	InterPro:SMP_LBD	EnsemblPlantsGene:SORBI_3002G393700
SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	UniParc:UPI00081AC558	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:74632236..74642343

Molecular Weight (calculated)

56655.4 Da

IEP (calculated)

5.028

GRAVY (calculated)

-0.163

Length

501 amino acids

Sequence
(BLAST)

001: MGFIHTKAEL KWLNQELVKI WPYVNEAASE LIKTSVEPVF EQYKSFILAS LHFSKLTLGT VAPQFTGVSI LESDDSAITM ELELQWDGNP NIVLDIQTTL
101: GISLPVQVKN IGFTGVLRLV FKPLVAELPC FGAVCCSLRE KSKVEFTLKV IGGEMTAIPG ISDAIEGTIR DTIEDTLTWP NRIIVPIVPG DYSDLELKPT
201: GVLEVKLVEA RDLTNKDLVG KSDPFAVLYI RPLREKTKKS KTINNDLNPI WNEHYEFVVE DISTQHLTVK IYDDEGLQSS EIIGCARVDL ADLQPGKVKD
301: LWLDLVKDLE IQRDKKPRGQ VHLELLYYPY AKHEGVPNPF ANQIQLTSLE KVLKTESNGY DVNQRKNVIM RGVLSVTVIS AEDLPPMDIG GKADPFVVLY
401: LKKGETKKKT RVVTDTLNPI WNQTFDFMVE DALHDLLMVE VWDHDTFGKD YVGRCILTLT RVILEGEFQD TFVLQGAKSG KLNLHFKWTP QPIYRDRDRD
501: Q

Best Arabidopsis Sequence Match ( AT1G05500.1 )
(BLAST)

001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS

Arabidopsis Description

SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.