Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G098900.2 | Wheat | endoplasmic reticulum, extracellular | 99.47 | 99.47 |
| HORVU6Hr1G017900.14 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 98.04 | 94.19 |
| KXG36798 | Sorghum | cytosol | 80.43 | 90.22 |
| Zm00001d007034_P008 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 88.79 | 85.01 |
| TraesCS2D01G518800.1 | Wheat | endoplasmic reticulum, extracellular, plastid | 65.12 | 64.21 |
| TraesCS2D01G242600.1 | Wheat | plasma membrane | 32.56 | 36.02 |
| TraesCS4D01G223100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 32.21 | 35.15 |
| TraesCS5D01G336200.1 | Wheat | endoplasmic reticulum | 28.83 | 30.06 |
| TraesCS7D01G437000.1 | Wheat | extracellular, vacuole | 28.47 | 29.68 |
| TraesCS5D01G336100.1 | Wheat | cytosol | 16.19 | 29.45 |
Protein Annotations
| Gene3D:2.60.40.150 | MapMan:35.1 | InterPro:C2_dom | InterPro:C2_domain_sf | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0008289 | InterPro:IPR000008 | InterPro:IPR031468 | InterPro:IPR035892 | PFAM:PF00168 | PFAM:PF17047 |
| PRINTS:PR00360 | PFscan:PS50004 | PFscan:PS51847 | PANTHER:PTHR10774 | PANTHER:PTHR10774:SF166 | SMART:SM00239 |
| InterPro:SMP_LBD | SUPFAM:SSF49562 | SignalP:SignalP-TM | InterPro:Synaptotagmin_SMP | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6D01G083600 |
| EnsemblPlants:TraesCS6D01G083600.2 | TIGR:cd00030 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6D:+:48667298..48677823
Molecular Weight (calculated)
63090.4 Da
IEP (calculated)
5.322
GRAVY (calculated)
-0.071
Length
562 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFLFGALLG LVLGVGVVMA FARIENSRAE QRRQLAATVS SFSKLSVQDL KTLIPTEAYP SWVSFTQKQK LKWLNQELVK IWPFVNEAAS ELIKSSVEPV
101: FEQYKSFILA SIHFSKLTLG TVAPQFTGVQ ILDSDIAGIT MELDMQWDGN PNIVLDIQTT LGISLPVQVK NIGFTGTLRL LFKPLVAELP CFGAVCVSLR
201: EKSKVDFTLK VVGGEMTAIP GISDAIEGTI RDTIEDTLTW PNRIIVPIVP GDYSDLELKP VGLLEVKLVE ARDLKNKDLV GKSDPFAVLY IRPLSAKTKK
301: SKTINNDLNP IWNEHYEFVV EDSSTQHLTV KIYDDEGLQP SEIIGCARVD LSDVMPGKVK DVWLELVKDL EIQRDKKPRG QVHLELLYYP FEKQEGVSNP
401: FAGQIQLTSL EKVLKTESNG YDVNQRKNVI TRGVLSVTVI SAEDIPAMDV MGKADPFVVL YLKKGETKKK TRVVTETLNP IWNQTFDFVV EDALHDLLIV
501: EVWDHDTFGK DYIGRCILTL TRAILEGEFQ DTYVLQGAKS GKLNLHFKWT AQPIYRDRDR DQ
101: FEQYKSFILA SIHFSKLTLG TVAPQFTGVQ ILDSDIAGIT MELDMQWDGN PNIVLDIQTT LGISLPVQVK NIGFTGTLRL LFKPLVAELP CFGAVCVSLR
201: EKSKVDFTLK VVGGEMTAIP GISDAIEGTI RDTIEDTLTW PNRIIVPIVP GDYSDLELKP VGLLEVKLVE ARDLKNKDLV GKSDPFAVLY IRPLSAKTKK
301: SKTINNDLNP IWNEHYEFVV EDSSTQHLTV KIYDDEGLQP SEIIGCARVD LSDVMPGKVK DVWLELVKDL EIQRDKKPRG QVHLELLYYP FEKQEGVSNP
401: FAGQIQLTSL EKVLKTESNG YDVNQRKNVI TRGVLSVTVI SAEDIPAMDV MGKADPFVVL YLKKGETKKK TRVVTETLNP IWNQTFDFVV EDALHDLLIV
501: EVWDHDTFGK DYIGRCILTL TRAILEGEFQ DTYVLQGAKS GKLNLHFKWT AQPIYRDRDR DQ
001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS
Arabidopsis Description
SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.