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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 3
  • plasma membrane 4
  • golgi 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G083600.2 Wheat endoplasmic reticulum, extracellular 94.19 98.04
TraesCS6A01G098900.2 Wheat endoplasmic reticulum, extracellular 94.02 97.86
KXG36798 Sorghum cytosol 77.09 90.02
Zm00001d007034_P008 Maize endoplasmic reticulum, extracellular, plasma membrane 85.64 85.35
HORVU2Hr1G114590.1 Barley endoplasmic reticulum, extracellular, plastid 62.39 64.04
HORVU4Hr1G062820.2 Barley endoplasmic reticulum, extracellular, plasma membrane 30.77 35.16
HORVU2Hr1G052430.2 Barley cytosol 20.17 33.43
HORVU5Hr1G084010.1 Barley endoplasmic reticulum, extracellular 27.69 30.06
HORVU7Hr1G101310.22 Barley extracellular, golgi 27.18 29.5
HORVU5Hr1G084020.3 Barley cytosol 9.57 25.69
Protein Annotations
Gene3D:2.60.40.150MapMan:35.1UniProt:A0A287TGI3EMBL:AK354162EMBL:AK358219InterPro:C2_dom
InterPro:C2_domain_sfGO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0006810GO:GO:0006869
GO:GO:0008150GO:GO:0008289GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:HORVU6Hr1G017900EnsemblPlants:HORVU6Hr1G017900.14
InterPro:IPR000008InterPro:IPR031468InterPro:IPR035892PFAM:PF00168PFAM:PF17047PFscan:PS50004
PFscan:PS51847PANTHER:PTHR10774PANTHER:PTHR10774:SF166SMART:SM00239InterPro:SMP_LBDSUPFAM:SSF49562
SignalP:SignalP-TMInterPro:Synaptotagmin_SMPTMHMM:TMhelixUniParc:UPI000B461EF3SEG:seg:
Description
No Description!
Coordinates
chrchr6H:-:43584782..43594304
Molecular Weight (calculated)
65674.4 Da
IEP (calculated)
5.219
GRAVY (calculated)
-0.051
Length
585 amino acids
Sequence
(BLAST)
001: MAFLFGALLG LVLGVGVVMA FARLENSRAE QRRELAATVS SFSKLTVQDL KTLIPTESYP SWVSFTQKQK LKWLNQELVK IWPFVNEAAS ELIKSSVEPV
101: FEQYKSFILA SIHFSKLTLG TVAPQFTGVQ ILDSDSAGIT MELDMQWDGN PNIVLDIQTT LGISLPVQVK NIGFTGTLRL LFKPLVAELP CFGAVCVSLR
201: EKSKVDFTLK VVGGEMTAIP GISDAIEGTI RDTIEDTLTW PNRIIVPIVP GDYSDLELKP VGLLEVKLVE ARDLKNKDLV GKSDPFAVLY IRPLSAKTKK
301: SKTINNDLNP IWNEHYEFVV EDSSTQHLTV KIYDDEGLQP SEIIGCARVD LSDIMPGKVK DVWLELVKDL EIQRDKKPRG QVHLELLYYP FDKQEGVSNP
401: FASQIQLTSL EKVLKTESNG YDVNQRKNVI TRGVLSVTVI SAEDIPAMDV MGKADPFVVL YLKKGETKKK TRVLSISICS AVHIFFSTSD SMYLQVVTET
501: LNPIWNQTFD FVVEDALHDL LMVEVWDHDT FGKDYIGRCI LTLTRAILEG EFQDTYALQG AKSGRLNLHF KWTAQPIYRD RDRDQ
Best Arabidopsis Sequence Match ( AT1G05500.1 )
(BLAST)
001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS
Arabidopsis Description
SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.