Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 4
- golgi 3
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS6D01G083600.2 | Wheat | endoplasmic reticulum, extracellular | 94.19 | 98.04 |
TraesCS6A01G098900.2 | Wheat | endoplasmic reticulum, extracellular | 94.02 | 97.86 |
KXG36798 | Sorghum | cytosol | 77.09 | 90.02 |
Zm00001d007034_P008 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 85.64 | 85.35 |
HORVU2Hr1G114590.1 | Barley | endoplasmic reticulum, extracellular, plastid | 62.39 | 64.04 |
HORVU4Hr1G062820.2 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 30.77 | 35.16 |
HORVU2Hr1G052430.2 | Barley | cytosol | 20.17 | 33.43 |
HORVU5Hr1G084010.1 | Barley | endoplasmic reticulum, extracellular | 27.69 | 30.06 |
HORVU7Hr1G101310.22 | Barley | extracellular, golgi | 27.18 | 29.5 |
HORVU5Hr1G084020.3 | Barley | cytosol | 9.57 | 25.69 |
Protein Annotations
Gene3D:2.60.40.150 | MapMan:35.1 | UniProt:A0A287TGI3 | EMBL:AK354162 | EMBL:AK358219 | InterPro:C2_dom |
InterPro:C2_domain_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006869 |
GO:GO:0008150 | GO:GO:0008289 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:HORVU6Hr1G017900 | EnsemblPlants:HORVU6Hr1G017900.14 |
InterPro:IPR000008 | InterPro:IPR031468 | InterPro:IPR035892 | PFAM:PF00168 | PFAM:PF17047 | PFscan:PS50004 |
PFscan:PS51847 | PANTHER:PTHR10774 | PANTHER:PTHR10774:SF166 | SMART:SM00239 | InterPro:SMP_LBD | SUPFAM:SSF49562 |
SignalP:SignalP-TM | InterPro:Synaptotagmin_SMP | TMHMM:TMhelix | UniParc:UPI000B461EF3 | SEG:seg | : |
Description
No Description!
Coordinates
chrchr6H:-:43584782..43594304
Molecular Weight (calculated)
65674.4 Da
IEP (calculated)
5.219
GRAVY (calculated)
-0.051
Length
585 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFLFGALLG LVLGVGVVMA FARLENSRAE QRRELAATVS SFSKLTVQDL KTLIPTESYP SWVSFTQKQK LKWLNQELVK IWPFVNEAAS ELIKSSVEPV
101: FEQYKSFILA SIHFSKLTLG TVAPQFTGVQ ILDSDSAGIT MELDMQWDGN PNIVLDIQTT LGISLPVQVK NIGFTGTLRL LFKPLVAELP CFGAVCVSLR
201: EKSKVDFTLK VVGGEMTAIP GISDAIEGTI RDTIEDTLTW PNRIIVPIVP GDYSDLELKP VGLLEVKLVE ARDLKNKDLV GKSDPFAVLY IRPLSAKTKK
301: SKTINNDLNP IWNEHYEFVV EDSSTQHLTV KIYDDEGLQP SEIIGCARVD LSDIMPGKVK DVWLELVKDL EIQRDKKPRG QVHLELLYYP FDKQEGVSNP
401: FASQIQLTSL EKVLKTESNG YDVNQRKNVI TRGVLSVTVI SAEDIPAMDV MGKADPFVVL YLKKGETKKK TRVLSISICS AVHIFFSTSD SMYLQVVTET
501: LNPIWNQTFD FVVEDALHDL LMVEVWDHDT FGKDYIGRCI LTLTRAILEG EFQDTYALQG AKSGRLNLHF KWTAQPIYRD RDRDQ
101: FEQYKSFILA SIHFSKLTLG TVAPQFTGVQ ILDSDSAGIT MELDMQWDGN PNIVLDIQTT LGISLPVQVK NIGFTGTLRL LFKPLVAELP CFGAVCVSLR
201: EKSKVDFTLK VVGGEMTAIP GISDAIEGTI RDTIEDTLTW PNRIIVPIVP GDYSDLELKP VGLLEVKLVE ARDLKNKDLV GKSDPFAVLY IRPLSAKTKK
301: SKTINNDLNP IWNEHYEFVV EDSSTQHLTV KIYDDEGLQP SEIIGCARVD LSDIMPGKVK DVWLELVKDL EIQRDKKPRG QVHLELLYYP FDKQEGVSNP
401: FASQIQLTSL EKVLKTESNG YDVNQRKNVI TRGVLSVTVI SAEDIPAMDV MGKADPFVVL YLKKGETKKK TRVLSISICS AVHIFFSTSD SMYLQVVTET
501: LNPIWNQTFD FVVEDALHDL LMVEVWDHDT FGKDYIGRCI LTLTRAILEG EFQDTYALQG AKSGRLNLHF KWTAQPIYRD RDRDQ
001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS
Arabidopsis Description
SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.