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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • cytosol 3
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:cytosol, secretory
BaCelLo:cytosol
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:cytosol
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G330400.1 Wheat golgi 98.14 98.14
TraesCS5D01G336200.1 Wheat endoplasmic reticulum 97.4 97.4
TraesCS5B01G330600.1 Wheat endoplasmic reticulum 97.03 94.58
EER99265 Sorghum endoplasmic reticulum 87.38 87.38
Os09t0538800-01 Rice plasma membrane 87.38 87.38
Zm00001d006238_P001 Maize plasma membrane 86.64 86.64
OQU92056 Sorghum endoplasmic reticulum 86.09 86.09
Zm00001d030116_P001 Maize cytosol 47.87 85.15
HORVU5Hr1G084020.3 Barley cytosol 33.21 82.11
Os01t0819200-00 Rice endoplasmic reticulum, extracellular 42.86 75.74
VIT_18s0001g14630.t01 Wine grape endoplasmic reticulum, extracellular 74.03 74.03
PGSC0003DMT400015793 Potato endoplasmic reticulum 73.1 73.1
Solyc01g111520.2.1 Tomato nucleus 72.54 72.54
KRH29282 Soybean endoplasmic reticulum 72.36 72.36
Zm00001d022625_P006 Maize cytosol, peroxisome, plastid 85.53 72.14
KRH24304 Soybean endoplasmic reticulum 71.61 71.61
VIT_03s0038g02330.t01 Wine grape endoplasmic reticulum 71.24 71.24
KRH05967 Soybean endoplasmic reticulum, extracellular 70.5 70.63
KRH17448 Soybean mitochondrion 70.13 70.26
KRH51399 Soybean endoplasmic reticulum, extracellular, plasma membrane 69.57 69.96
AT1G20080.3 Thale cress endoplasmic reticulum, extracellular, plasma membrane 67.9 68.16
CDY43415 Canola endoplasmic reticulum, extracellular 67.9 68.03
Bra016478.1-P Field mustard endoplasmic reticulum, extracellular 63.45 67.19
CDY62938 Canola endoplasmic reticulum, extracellular 68.09 66.85
CDY54339 Canola endoplasmic reticulum, extracellular 68.09 66.85
PGSC0003DMT400075422 Potato endoplasmic reticulum, extracellular 66.79 66.79
Bra031157.1-P Field mustard endoplasmic reticulum, extracellular 66.98 66.73
CDX81995 Canola endoplasmic reticulum, extracellular 66.98 66.73
CDY13846 Canola endoplasmic reticulum, extracellular 66.98 66.73
Solyc12g089330.1.1 Tomato endoplasmic reticulum, extracellular 64.19 65.9
CDY57593 Canola endoplasmic reticulum, extracellular 67.35 65.76
Bra012209.1-P Field mustard cytosol 46.57 65.03
AT2G20990.3 Thale cress endoplasmic reticulum, extracellular 67.35 62.69
AT2G21010.1 Thale cress cytosol 28.01 58.98
HORVU7Hr1G101310.22 Barley extracellular, golgi 51.21 51.21
HORVU6Hr1G017900.14 Barley endoplasmic reticulum, extracellular, plasma membrane 30.06 27.69
HORVU2Hr1G114590.1 Barley endoplasmic reticulum, extracellular, plastid 28.76 27.19
AT2G21040.1 Thale cress cytosol 12.8 26.44
HORVU4Hr1G062820.2 Barley endoplasmic reticulum, extracellular, plasma membrane 23.93 25.2
HORVU2Hr1G052430.2 Barley cytosol 15.77 24.08
Protein Annotations
Gene3D:2.60.40.150MapMan:5.8.1.2InterPro:C2_domInterPro:C2_domain_sfGO:GO:0003674GO:GO:0005488
GO:GO:0005575GO:GO:0006810GO:GO:0006869GO:GO:0008150GO:GO:0008289GO:GO:0016020
GO:GO:0016021EnsemblPlantsGene:HORVU5Hr1G084010EnsemblPlants:HORVU5Hr1G084010.1InterPro:IPR000008InterPro:IPR031468InterPro:IPR035892
UniProt:M0WGN1PFAM:PF00168PFAM:PF17047PRINTS:PR00360PFscan:PS50004PFscan:PS51847
PANTHER:PTHR10774PANTHER:PTHR10774:SF50SMART:SM00239InterPro:SMP_LBDSUPFAM:SSF49562InterPro:Synaptotagmin_SMP
TMHMM:TMhelixUniParc:UPI0002962D82SEG:seg:::
Description
No Description!
Coordinates
chrchr5H:+:570946251..570952771
Molecular Weight (calculated)
61340.6 Da
IEP (calculated)
6.538
GRAVY (calculated)
-0.307
Length
539 amino acids
Sequence
(BLAST)
001: MGVVSTVLGL FGFGFGFSSG IVIGYYFFIY FQPTNVKDVE VRPLVEYDST SLDGILPEIP MWVKNPDYDR IDWLNRFLEL MWPNLNKAIC RMAQDIAKPI
101: IAENCEKYKI DSVEFETLTL GSLPPTFQGM KVYITDEKEL IMEPSLKWAA NPNITVVAKA YGLKATVQIV DLQVFASPRI TLKPLVPTFP CFANISVSLM
201: EKPHVDFGLK LFGADLMAIP VLYKFVQDTI KKQVANMYLW PKTLEVPIMD PSKASKKPVG ILLLKVVRAQ NLKKKDLLGK SDPYAKLKMT DDKLPSKKTS
301: VKRSNLNPEW NEEFKFVVTD PENQSLEVNV FDWEQVGKHE KMGMNRILLK ELPPEETKVM TLNLLKTMDP NDIQNEKSRG QIILEATYKP FKEDDMEKES
401: VDGVDEVQKA PENTPAGGGL LFVVVHEAQD LEGKHHTNPY AKIIFKGEEK KTKVIKKNRD PRWEDEFEFV CEEPPTNDKL HVEVLSKAGK KGILHGKEAL
501: GYIDITLADV ISNKRINEKF HLIDSKNGQI QIELQWRTS
Best Arabidopsis Sequence Match ( AT1G20080.2 )
(BLAST)
001: MGIISTILGV IGFGFGTTIG IVIGYYLFIY FQSTDVEDPE IKPLVELDSE TIATMFPEIP MWVKNPDFDR IDWLNKLIGH MWPYMDKAIC KMAKSIAKPI
101: IAEQIPNYKI DSVEFEMLTL GSLPPSFQGM KVYATDDKEI IMELSVKWAG NPNIIVVAKA FGLKATVQVI DLQVYATPRI TLKPLVPSFP CFANIFVSLM
201: DKPQVDFGLK LLGADVMAIP GLYRFVQEII KDQVANMYLW PKTLNVQIMD PSKAMKKPVG LLSVKVIKAI KLKKKDLLGG SDPYVKLTLS GDKVPGKKTV
301: VKHSNLNPEW NEEFDLVVKE PESQELQLIV YDWEQVGKHD KIGMNVIQLK DLTPEEPKLM TLELLKSMEP KEPVSEKSRG QLVVEVEYKP FKDDDIPENI
401: DDPNAVEKAP EGTPSTGGLL VVIVHEAEDL EGKYHTNPSV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISSSSRL IHPKETLGYV
501: VINLGDVVSN RRINDKYHLI DSKNGRIQIE LQWRNSS
Arabidopsis Description
SYT2Synaptotagmin-2 [Source:UniProtKB/Swiss-Prot;Acc:B6ETT4]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.