CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

cytosol 3
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24304	Soybean	endoplasmic reticulum	83.96	83.49
KRH29282	Soybean	endoplasmic reticulum	83.77	83.3
VIT_03s0038g02330.t01	Wine grape	endoplasmic reticulum	76.12	75.7
KRH17448	Soybean	mitochondrion	75.56	75.28
KRH05967	Soybean	endoplasmic reticulum, extracellular	75.37	75.09
PGSC0003DMT400015793	Potato	endoplasmic reticulum	75.19	74.77
Solyc01g111520.2.1	Tomato	nucleus	75.0	74.58
GSMUA_Achr4P25570_001	Banana	endoplasmic reticulum, extracellular	73.88	73.61
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	73.32	73.05
EER99265	Sorghum	endoplasmic reticulum	71.08	70.69
Zm00001d006238_P001	Maize	plasma membrane	70.9	70.5
CDY13846	Canola	endoplasmic reticulum, extracellular	70.9	70.24
CDX81995	Canola	endoplasmic reticulum, extracellular	70.9	70.24
Bra031157.1-P	Field mustard	endoplasmic reticulum, extracellular	70.9	70.24
TraesCS5D01G336200.1	Wheat	endoplasmic reticulum	70.52	70.13
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	69.4	69.92
OQU92056	Sorghum	endoplasmic reticulum	70.15	69.76
HORVU5Hr1G084010.1	Barley	endoplasmic reticulum, extracellular	69.96	69.57
TraesCS5A01G330400.1	Wheat	golgi	69.4	69.02
TraesCS5B01G330600.1	Wheat	endoplasmic reticulum	70.71	68.54
Zm00001d030116_P001	Maize	cytosol	38.25	67.66
AT2G20990.3	Thale cress	endoplasmic reticulum, extracellular	70.15	64.94
HORVU5Hr1G084020.3	Barley	cytosol	25.93	63.76
TraesCS5D01G336100.1	Wheat	cytosol	36.75	63.75
TraesCS5B01G330500.1	Wheat	cytosol	34.7	63.27
AT2G21010.1	Thale cress	cytosol	29.1	60.94
GSMUA_Achr1P26490_001	Banana	cytosol, mitochondrion	59.7	60.26
Zm00001d022625_P006	Maize	cytosol, peroxisome, plastid	69.22	58.06
KRH34856	Soybean	extracellular	55.97	55.05
KRG91923	Soybean	endoplasmic reticulum, extracellular, plasma membrane	54.48	53.58
KRH15981	Soybean	extracellular	12.13	43.05
Os01t0819300-01	Rice	cytosol, mitochondrion, plastid	9.14	42.61
KRG95324	Soybean	extracellular, plasma membrane	8.58	38.02
KRH52409	Soybean	endoplasmic reticulum, extracellular	29.66	27.7
KRH03623	Soybean	endoplasmic reticulum	30.41	27.44
AT2G21040.1	Thale cress	cytosol	12.69	26.05
KRH48321	Soybean	endoplasmic reticulum, mitochondrion	25.19	25.76
KRH65210	Soybean	endoplasmic reticulum, mitochondrion	25.0	25.05
KRH00619	Soybean	mitochondrion, plasma membrane	25.19	24.77
KRH40562	Soybean	endoplasmic reticulum	24.44	24.49
KRH55269	Soybean	cytosol, plasma membrane	11.57	23.66

Protein Annotations

EntrezGene:100780850	Gene3D:2.60.40.150	MapMan:5.8.1.2	EMBL:ACUP02003373	InterPro:C2_dom	InterPro:C2_domain_sf
EnsemblPlantsGene:GLYMA_06G003700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0006869
GO:GO:0008150	GO:GO:0008289	GO:GO:0016020	GO:GO:0016021	UniProt:I1K6Z2	InterPro:IPR000008
InterPro:IPR031468	InterPro:IPR035892	EnsemblPlants:KRH51399	ProteinID:KRH51399	ProteinID:KRH51399.1	PFAM:PF00168
PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF50
SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI000233A8D5
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:326326..332702

Molecular Weight (calculated)

61565.8 Da

IEP (calculated)

5.766

GRAVY (calculated)

-0.310

Length

536 amino acids

Sequence
(BLAST)

001: MGFFGTIFGF FGFGIGISIG FVIGYFLFIY VQPTDVKDPE IQPLAEEDSE TLQRMIPEIP LWIKNPDFDR VDWLNKLIEY MWPYLDKAIC KTAKNIAKPI
101: IDEQIPKYKI DSVEFEEFTL GSLPPTFQGM KVYETDEKEL IMEPSIKWAG NPNVIVAVKK FGLKAIIQVM DLQAFLAPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LVGVDLMSIP GFYKFVQEFI KDQVANMYLW PKTLEVQVID PTKALKRPVG ILNAKILKAM KLKKKDLLGA SDPYVKLNLT EDKLTSKKTT
301: VKHKNLNPEW NEEFSLVVKD PESQALELYV YDWEQVGKHD KMGMNMVPLK ELLPEEPKVF TLDLLKNMDP NDAQNEKSRG QIVLELTYKP FREEDLAGFD
401: ETQPIQKAPE GTPPGGGLLV VIIHEAQDIE GKYHTNPHVR LIFRGEEKRT KVMKKNRDPR WEEEFQFLVE EPPTNDKLHV EVVSTSSRNL LRQKESLGYA
501: DISLADVVAN NRINERHHLI DSKNGRIQIE LQWRAS

Best Arabidopsis Sequence Match ( AT1G20080.2 )
(BLAST)

001: MGIISTILGV IGFGFGTTIG IVIGYYLFIY FQSTDVEDPE IKPLVELDSE TIATMFPEIP MWVKNPDFDR IDWLNKLIGH MWPYMDKAIC KMAKSIAKPI
101: IAEQIPNYKI DSVEFEMLTL GSLPPSFQGM KVYATDDKEI IMELSVKWAG NPNIIVVAKA FGLKATVQVI DLQVYATPRI TLKPLVPSFP CFANIFVSLM
201: DKPQVDFGLK LLGADVMAIP GLYRFVQEII KDQVANMYLW PKTLNVQIMD PSKAMKKPVG LLSVKVIKAI KLKKKDLLGG SDPYVKLTLS GDKVPGKKTV
301: VKHSNLNPEW NEEFDLVVKE PESQELQLIV YDWEQVGKHD KIGMNVIQLK DLTPEEPKLM TLELLKSMEP KEPVSEKSRG QLVVEVEYKP FKDDDIPENI
401: DDPNAVEKAP EGTPSTGGLL VVIVHEAEDL EGKYHTNPSV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISSSSRL IHPKETLGYV
501: VINLGDVVSN RRINDKYHLI DSKNGRIQIE LQWRNSS

Arabidopsis Description

SYT2Synaptotagmin-2 [Source:UniProtKB/Swiss-Prot;Acc:B6ETT4]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.