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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 1
  • plastid 2
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:plastid, secretory
BaCelLo:cytosol
ChloroP:plastid
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400054286 Potato extracellular 10.44 88.57
PGSC0003DMT400068835 Potato extracellular 10.44 88.57
PGSC0003DMT400046490 Potato cytosol 11.45 80.95
VIT_11s0118g00230.t01 Wine grape endoplasmic reticulum, extracellular 77.1 80.78
PGSC0003DMT400020478 Potato cytosol 56.9 79.34
Solyc12g009790.1.1 Tomato endoplasmic reticulum 74.75 78.58
Solyc07g007680.2.1 Tomato plastid 73.74 77.94
PGSC0003DMT400078832 Potato cytosol 34.68 77.74
CDY47278 Canola endoplasmic reticulum, extracellular 72.73 77.28
Bra015431.1-P Field mustard endoplasmic reticulum, extracellular 72.73 77.28
AT1G05500.1 Thale cress endoplasmic reticulum, extracellular 71.89 76.25
CDY10116 Canola endoplasmic reticulum, extracellular 73.23 75.65
CDY15543 Canola endoplasmic reticulum, extracellular 72.56 75.61
PGSC0003DMT400078829 Potato extracellular, plasma membrane 32.83 75.58
CDX86575 Canola endoplasmic reticulum, extracellular 72.56 74.7
GSMUA_Achr1P26040_001 Banana endoplasmic reticulum, golgi 70.03 74.42
GSMUA_Achr7P05380_001 Banana endoplasmic reticulum 71.89 73.24
PGSC0003DMT400041534 Potato cytosol 17.85 73.1
Zm00001d002090_P001 Maize endoplasmic reticulum, extracellular, plastid 70.2 72.4
EES11541 Sorghum extracellular, golgi 69.53 71.7
KRH52409 Soybean endoplasmic reticulum, extracellular 68.52 70.91
TraesCS2B01G545700.3 Wheat endoplasmic reticulum, extracellular, plastid 67.85 70.7
TraesCS2A01G517200.1 Wheat endoplasmic reticulum, extracellular, plastid 67.68 70.53
TraesCS2D01G518800.1 Wheat endoplasmic reticulum, extracellular, plastid 67.51 70.35
HORVU2Hr1G114590.1 Barley endoplasmic reticulum, extracellular, plastid 67.34 70.18
Bra030612.1-P Field mustard endoplasmic reticulum, extracellular 72.9 67.87
GSMUA_Achr3P19840_001 Banana endoplasmic reticulum, golgi, plastid 66.16 65.83
Solyc12g009700.1.1 Tomato extracellular, plasma membrane 33.33 64.71
Solyc12g009760.1.1 Tomato extracellular 13.47 64.52
KRH48321 Soybean endoplasmic reticulum, mitochondrion 30.64 34.73
KRH65210 Soybean endoplasmic reticulum, mitochondrion 30.98 34.39
KRH40562 Soybean endoplasmic reticulum 29.8 33.08
KRH00619 Soybean mitochondrion, plasma membrane 30.13 32.84
KRH55269 Soybean cytosol, plasma membrane 14.48 32.82
KRH24304 Soybean endoplasmic reticulum 28.11 30.98
KRH29282 Soybean endoplasmic reticulum 27.95 30.8
KRH05967 Soybean endoplasmic reticulum, extracellular 27.61 30.48
KRH51399 Soybean endoplasmic reticulum, extracellular, plasma membrane 27.44 30.41
KRH17448 Soybean mitochondrion 27.44 30.3
KRG91923 Soybean endoplasmic reticulum, extracellular, plasma membrane 26.43 28.81
KRH34856 Soybean extracellular 26.26 28.62
KRH15981 Soybean extracellular 5.89 23.18
KRG95324 Soybean extracellular, plasma membrane 4.38 21.49
Protein Annotations
Gene3D:2.60.40.150MapMan:35.1UniProt:A0A0R0FB49EMBL:ACUP02010355InterPro:C2_domInterPro:C2_domain_sf
EnsemblPlantsGene:GLYMA_17G109500GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005886GO:GO:0006810GO:GO:0006869GO:GO:0008150
GO:GO:0008289GO:GO:0009506GO:GO:0012505GO:GO:0016020GO:GO:0016021InterPro:IPR000008
InterPro:IPR031468InterPro:IPR035892EnsemblPlants:KRH03623ProteinID:KRH03623ProteinID:KRH03623.1PFAM:PF00168
PFAM:PF17047PRINTS:PR00360PFscan:PS50004PFscan:PS51847PANTHER:PTHR10774PANTHER:PTHR10774:SF167
SMART:SM00239InterPro:SMP_LBDSUPFAM:SSF49562InterPro:Synaptotagmin_SMPTMHMM:TMhelixUniParc:UPI0006ED5709
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr17:-:8574055..8582602
Molecular Weight (calculated)
66526.6 Da
IEP (calculated)
5.593
GRAVY (calculated)
0.011
Length
594 amino acids
Sequence
(BLAST)
001: MGFIFGVVVG IIVGLAIIVG FVRGENSRAA QRSQLATTVA AFARMTVEDS RKILPPQFYP SWVVFSSSQK LSLLLLSTSS SIFSLRCFDD SHFFCYCFQL
101: TWLNSHLTKI WPYVNEAASE LIKASVEPIL EEYRPVVLAA LKFSKFTLGT VAPQFTGVSI IEDGGDGVTM ELEMQWDGNP SIILDIKTLL GVALPVQVKN
201: IGFTGVFRLI FKPLVDEFPG FGAVSYSLRQ KKKLDFTLKV IGGDISAIPG LYDAIEGAIR DAVEDSITWP VRKVVPILPG DYSDLELKPE GILEVKLVQA
301: KELTNKDIIG KSDPYAVVYI RPLRERMKKS KTINNDLNPI WNEHFEFVVE DVSTQHVTVK VYDSEGLQSS ELIGCAQLQL SELQPGKVKD VWLKLVKDLE
401: IQRDTKNRGQ VHLELLYCPF GMENSFTNPF APNYSMTSLE KVLKNANGVE SNGNENAVTQ KKKEVIIRGV LSVTVISAED LPATDFMGKS DPFVVLTLKK
501: AETKNKTRVV NDSLNPVWNQ TFDFVVEDGL HDMLIVEVWD HDTFGKDYMG RCILTLTRVI LEGEYKERFV LDGAKSGFLN LHLKWMPQPI FRDS
Best Arabidopsis Sequence Match ( AT1G05500.1 )
(BLAST)
001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS
Arabidopsis Description
SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.