Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400020478 | Potato | cytosol | 81.89 | 50.94 |
| Solyc07g007680.2.1 | Tomato | plastid | 96.98 | 45.73 |
| VIT_11s0118g00230.t01 | Wine grape | endoplasmic reticulum, extracellular | 77.36 | 36.16 |
| AT1G05500.1 | Thale cress | endoplasmic reticulum, extracellular | 73.58 | 34.82 |
| KRH03623 | Soybean | endoplasmic reticulum | 77.74 | 34.68 |
| Bra015431.1-P | Field mustard | endoplasmic reticulum, extracellular | 72.83 | 34.53 |
| CDY47278 | Canola | endoplasmic reticulum, extracellular | 72.83 | 34.53 |
| GSMUA_Achr1P26040_001 | Banana | endoplasmic reticulum, golgi | 72.83 | 34.53 |
| GSMUA_Achr7P05380_001 | Banana | endoplasmic reticulum | 75.85 | 34.48 |
| CDY15543 | Canola | endoplasmic reticulum, extracellular | 73.58 | 34.21 |
| CDY10116 | Canola | endoplasmic reticulum, extracellular | 72.83 | 33.57 |
| CDX86575 | Canola | endoplasmic reticulum, extracellular | 72.45 | 33.28 |
| PGSC0003DMT400036226 | Potato | endoplasmic reticulum | 68.3 | 32.79 |
| Zm00001d002090_P001 | Maize | endoplasmic reticulum, extracellular, plastid | 69.06 | 31.77 |
| EES11541 | Sorghum | extracellular, golgi | 69.06 | 31.77 |
| TraesCS2B01G545700.3 | Wheat | endoplasmic reticulum, extracellular, plastid | 67.55 | 31.4 |
| TraesCS2D01G518800.1 | Wheat | endoplasmic reticulum, extracellular, plastid | 66.79 | 31.05 |
| HORVU2Hr1G114590.1 | Barley | endoplasmic reticulum, extracellular, plastid | 66.42 | 30.88 |
| TraesCS2A01G517200.1 | Wheat | endoplasmic reticulum, extracellular, plastid | 66.04 | 30.7 |
| GSMUA_Achr3P19840_001 | Banana | endoplasmic reticulum, golgi, plastid | 68.68 | 30.49 |
| Bra030612.1-P | Field mustard | endoplasmic reticulum, extracellular | 72.83 | 30.25 |
| PGSC0003DMT400035570 | Potato | cytosol | 24.91 | 17.65 |
| PGSC0003DMT400015793 | Potato | endoplasmic reticulum | 26.79 | 13.17 |
| PGSC0003DMT400075422 | Potato | endoplasmic reticulum, extracellular | 26.79 | 13.17 |
| PGSC0003DMT400055528 | Potato | mitochondrion | 26.79 | 13.03 |
| PGSC0003DMT400026606 | Potato | cytosol, endoplasmic reticulum, mitochondrion, plastid | 21.51 | 11.83 |
| PGSC0003DMT400078829 | Potato | extracellular, plasma membrane | 0.38 | 0.39 |
| PGSC0003DMT400068835 | Potato | extracellular | 0.0 | 0.0 |
| PGSC0003DMT400054286 | Potato | extracellular | 0.0 | 0.0 |
| PGSC0003DMT400046490 | Potato | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400041534 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400078832 | EnsemblPlantsGene:PGSC0003DMG402030679 | Gene3D:2.60.40.150 | InterPro:C2_dom | InterPro:C2_domain_sf | InterPro:IPR000008 |
| InterPro:IPR035892 | PANTHER:PTHR10774 | PANTHER:PTHR10774:SF166 | PFAM:PF00168 | PFscan:PS50004 | PGSC:PGSC0003DMG402030679 |
| PRINTS:PR00360 | SEG:seg | SMART:SM00239 | SUPFAM:SSF49562 | UniParc:UPI00029547A6 | UniProt:M1D0T3 |
| MapMan:35.1 | : | : | : | : | : |
Description
Calcium lipid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG402030679]
Coordinates
chr7:-:3597507..3601313
Molecular Weight (calculated)
30150.2 Da
IEP (calculated)
5.235
GRAVY (calculated)
-0.366
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKSKTINNE LNPIWNEHFE FVVEDPLTQH LVIKIYDDEG LQAAELIGCA HVRLNELEPG KVKDVWLKLV KDLEIQRDQK NRGQVHLELL YCPYGTTNGF
101: SNPFADNVQL TSLEKVLKSG AEAAQNGGEI NRRKDVIVRG VLSVTVISAE DLAPTDLMGK ADPYVVVTMK KTETKNKTRV VPESLNPVWN QTFDFVVEDG
201: LHDMLILELW DHDTFGKDYM GRCILTLTRV LMEGEYKEIF ELDGAKSGKL NLHLKWAPQP LYRDS
101: SNPFADNVQL TSLEKVLKSG AEAAQNGGEI NRRKDVIVRG VLSVTVISAE DLAPTDLMGK ADPYVVVTMK KTETKNKTRV VPESLNPVWN QTFDFVVEDG
201: LHDMLILELW DHDTFGKDYM GRCILTLTRV LMEGEYKEIF ELDGAKSGKL NLHLKWAPQP LYRDS
001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS
Arabidopsis Description
SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.