Factsheet for PGSC0003DMT400020478

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054286	Potato	extracellular	15.49	94.29
PGSC0003DMT400068835	Potato	extracellular	15.49	94.29
PGSC0003DMT400078832	Potato	cytosol	50.94	81.89
Solyc12g009790.1.1	Tomato	endoplasmic reticulum	99.06	74.69
PGSC0003DMT400041534	Potato	cytosol	24.65	72.41
VIT_11s0118g00230.t01	Wine grape	endoplasmic reticulum, extracellular	78.4	58.91
Bra015431.1-P	Field mustard	endoplasmic reticulum, extracellular	75.35	57.42
CDY47278	Canola	endoplasmic reticulum, extracellular	75.35	57.42
AT1G05500.1	Thale cress	endoplasmic reticulum, extracellular	75.12	57.14
CDY15543	Canola	endoplasmic reticulum, extracellular	76.29	57.02
KRH03623	Soybean	endoplasmic reticulum	79.34	56.9
GSMUA_Achr1P26040_001	Banana	endoplasmic reticulum, golgi	73.71	56.17
CDX86575	Canola	endoplasmic reticulum, extracellular	75.59	55.81
CDY10116	Canola	endoplasmic reticulum, extracellular	75.12	55.65
GSMUA_Achr7P05380_001	Banana	endoplasmic reticulum	75.35	55.06
PGSC0003DMT400036226	Potato	endoplasmic reticulum	70.89	54.71
Zm00001d002090_P001	Maize	endoplasmic reticulum, extracellular, plastid	72.3	53.47
EES11541	Sorghum	extracellular, golgi	71.6	52.95
TraesCS2B01G545700.3	Wheat	endoplasmic reticulum, extracellular, plastid	70.42	52.63
TraesCS2A01G517200.1	Wheat	endoplasmic reticulum, extracellular, plastid	69.95	52.28
TraesCS2D01G518800.1	Wheat	endoplasmic reticulum, extracellular, plastid	69.95	52.28
HORVU2Hr1G114590.1	Barley	endoplasmic reticulum, extracellular, plastid	69.72	52.11
GSMUA_Achr3P19840_001	Banana	endoplasmic reticulum, golgi, plastid	71.13	50.75
Bra030612.1-P	Field mustard	endoplasmic reticulum, extracellular	75.59	50.47
PGSC0003DMT400078829	Potato	extracellular, plasma membrane	24.88	41.09
PGSC0003DMT400035570	Potato	cytosol	30.99	35.29
PGSC0003DMT400026606	Potato	cytosol, endoplasmic reticulum, mitochondrion, plastid	28.87	25.52
PGSC0003DMT400015793	Potato	endoplasmic reticulum	30.52	24.12
PGSC0003DMT400055528	Potato	mitochondrion	29.81	23.3
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	29.11	23.01
PGSC0003DMT400046490	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0008289	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	UniProt:M1ADK1	PFAM:PF00168
EnsemblPlantsGene:PGSC0003DMG400007914	PGSC:PGSC0003DMG400007914	EnsemblPlants:PGSC0003DMT400020478	PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847
PANTHER:PTHR10774	PANTHER:PTHR10774:SF166	SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562	UniParc:UPI0002962A40

Description

Calcium lipid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007914]

Coordinates

chr12:-:2501094..2509058

Molecular Weight (calculated)

48241.5 Da

IEP (calculated)

5.044

GRAVY (calculated)

-0.215

Length

426 amino acids

Sequence
(BLAST)

001: MELEMQWDGN PSIILDIMTY VGVALPVQVK NIAFTGIFRL IFRPLVDEFP CFGAVCYSLR QKKKLDFTLK VIGGDMTAIP GLSDAIEGTI RDAVEDSITW
101: PVRKVIPILP GDYSDLELKP TGVLEVKLVQ AKELTNKDLI GKSDPFAVLY VRPLRDRMKK SKIINNDLNP IWNEHFEFVV EDPLTQHLVV KIYDDEGLQS
201: AELIGCAHIC LNELEPGKVK DIWLKLVKDL EIQRDQKNRG QVHLELLYCP NGMNNGLSNP FSQNESMTSL ERVLKNSAEG KEASPNGSEI NNRREVIVRG
301: VLSVTVVSAD DLPPADIGGK ADPYVVLIMK KAQIKNKTRV VNESLNPVWN QTFDFVVEDG LHDMLMLEVW DHDTFGKDFM GRCILTLTRV LMEGEYKDTY
401: ELAEAKSGKL NLHLKWNPQP IYRDYQ

Best Arabidopsis Sequence Match ( AT1G05500.1 )
(BLAST)

001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS

Arabidopsis Description

SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.