Factsheet for Solyc12g009790.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020478	Potato	cytosol	74.69	99.06
Solyc07g007680.2.1	Tomato	plastid	85.49	85.94
Solyc12g009700.1.1	Tomato	extracellular, plasma membrane	44.78	82.68
VIT_11s0118g00230.t01	Wine grape	endoplasmic reticulum, extracellular	76.81	76.54
KRH03623	Soybean	endoplasmic reticulum	78.58	74.75
AT1G05500.1	Thale cress	endoplasmic reticulum, extracellular	73.98	74.64
Bra015431.1-P	Field mustard	endoplasmic reticulum, extracellular	73.63	74.42
CDY47278	Canola	endoplasmic reticulum, extracellular	73.63	74.42
CDY15543	Canola	endoplasmic reticulum, extracellular	74.34	73.68
CDX86575	Canola	endoplasmic reticulum, extracellular	73.81	72.27
CDY10116	Canola	endoplasmic reticulum, extracellular	73.45	72.17
GSMUA_Achr1P26040_001	Banana	endoplasmic reticulum, golgi	70.62	71.38
GSMUA_Achr7P05380_001	Banana	endoplasmic reticulum	72.04	69.81
Zm00001d002090_P001	Maize	endoplasmic reticulum, extracellular, plastid	70.97	69.62
EES11541	Sorghum	extracellular, golgi	70.09	68.75
Solyc12g009760.1.1	Tomato	extracellular	15.04	68.55
TraesCS2B01G545700.3	Wheat	endoplasmic reticulum, extracellular, plastid	69.03	68.42
TraesCS2D01G518800.1	Wheat	endoplasmic reticulum, extracellular, plastid	68.85	68.25
TraesCS2A01G517200.1	Wheat	endoplasmic reticulum, extracellular, plastid	68.67	68.07
HORVU2Hr1G114590.1	Barley	endoplasmic reticulum, extracellular, plastid	68.5	67.89
Solyc08g021940.1.1	Tomato	extracellular, plasma membrane	33.81	67.02
GSMUA_Achr3P19840_001	Banana	endoplasmic reticulum, golgi, plastid	69.2	65.49
Bra030612.1-P	Field mustard	endoplasmic reticulum, extracellular	73.45	65.05
Solyc10g052520.1.1	Tomato	endoplasmic reticulum, extracellular	16.28	35.8
Solyc10g017590.2.1	Tomato	mitochondrion	30.09	35.79
Solyc05g047710.2.1	Tomato	endoplasmic reticulum, mitochondrion	31.33	35.76
Solyc01g094030.2.1	Tomato	plastid	31.5	35.25
Solyc09g007860.2.1	Tomato	endoplasmic reticulum	29.03	30.09
Solyc01g111520.2.1	Tomato	nucleus	28.14	29.5
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	27.26	29.33

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0008289	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	UniProt:K4DC67	PFAM:PF00168
PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF166
SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562	EnsemblPlantsGene:Solyc12g009790.1	EnsemblPlants:Solyc12g009790.1.1	InterPro:Synaptotagmin_SMP
TMHMM:TMhelix	UniParc:UPI0002769B32	:	:	:	:

Description

No Description!

Coordinates

chr12:+:2996761..3004035

Molecular Weight (calculated)

63557.9 Da

IEP (calculated)

5.223

GRAVY (calculated)

-0.107

Length

565 amino acids

Sequence
(BLAST)

001: MSFVLGVVFG IAFGLAIIVA FVKSENARSK QRTDLASGIA AFARMTVEDS RKIFTPEQYP SWVVFSNQQK LAWLNSHLEK IWPYVDEAAS ELVKSSVEPI
101: LEQYRPVILA SLKFSKFTLG TVAPQFTGIS IIEDGNEGIT MELEMQWDGN PSIILDIMTY VGVALPVQVK NIAFTGIFRL IFRPLVDEFP CFGAVCYSLR
201: QKKKLDFTLK VIGGDMTAIP GLSDAIEGTI RDAVEDSITW PVRKVIPILP GDYSDLELKP TGVLEVKLVQ AKELTNKDII GKSDPFAVLY VRPLRDRMKK
301: SKIINNDLNP IWNEHFEFVV EDPLTQHLVV KIYDDEGLQS AELIGCAHIC LNELEPGKVK DIWLKLVKDL EIQRDQKNRG QVHLELLYCP NGMNNGLSNP
401: FSQNESMTSL ERVLKNSAEG KEASPNGSEI NNRREVIVRG VLSVTVVSAD DLPPADIGGK ADPYVVLIMK KAQIKNKTRV VNESLNPVWN QTFDFVVEDG
501: LHDMLMLEVW DHDTFGKDFM GRCILTLTRV LMEGEYKDSY ELAEAKSGKL NLHLKWNPQP IYRDH

Best Arabidopsis Sequence Match ( AT1G05500.1 )
(BLAST)

001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS

Arabidopsis Description

SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.