Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47278 | Canola | endoplasmic reticulum, extracellular | 93.39 | 93.56 |
| Bra015431.1-P | Field mustard | endoplasmic reticulum, extracellular | 93.39 | 93.56 |
| CDY15543 | Canola | endoplasmic reticulum, extracellular | 93.75 | 92.11 |
| CDX86575 | Canola | endoplasmic reticulum, extracellular | 93.75 | 90.99 |
| CDY10116 | Canola | endoplasmic reticulum, extracellular | 93.04 | 90.61 |
| Bra030612.1-P | Field mustard | endoplasmic reticulum, extracellular | 92.86 | 81.5 |
| PGSC0003DMT400046490 | Potato | cytosol | 12.14 | 80.95 |
| PGSC0003DMT400068835 | Potato | extracellular | 9.46 | 75.71 |
| PGSC0003DMT400054286 | Potato | extracellular | 9.46 | 75.71 |
| PGSC0003DMT400020478 | Potato | cytosol | 57.14 | 75.12 |
| PGSC0003DMT400078829 | Potato | extracellular, plasma membrane | 34.11 | 74.03 |
| Solyc12g009790.1.1 | Tomato | endoplasmic reticulum | 74.64 | 73.98 |
| Solyc07g007680.2.1 | Tomato | plastid | 74.11 | 73.84 |
| PGSC0003DMT400078832 | Potato | cytosol | 34.82 | 73.58 |
| VIT_11s0118g00230.t01 | Wine grape | endoplasmic reticulum, extracellular | 74.46 | 73.55 |
| KRH03623 | Soybean | endoplasmic reticulum | 76.25 | 71.89 |
| GSMUA_Achr1P26040_001 | Banana | endoplasmic reticulum, golgi | 70.54 | 70.66 |
| TraesCS2B01G545700.3 | Wheat | endoplasmic reticulum, extracellular, plastid | 71.61 | 70.35 |
| TraesCS2A01G517200.1 | Wheat | endoplasmic reticulum, extracellular, plastid | 71.07 | 69.82 |
| TraesCS2D01G518800.1 | Wheat | endoplasmic reticulum, extracellular, plastid | 71.07 | 69.82 |
| HORVU2Hr1G114590.1 | Barley | endoplasmic reticulum, extracellular, plastid | 70.89 | 69.65 |
| Zm00001d002090_P001 | Maize | endoplasmic reticulum, extracellular, plastid | 71.25 | 69.27 |
| GSMUA_Achr7P05380_001 | Banana | endoplasmic reticulum | 71.79 | 68.95 |
| EES11541 | Sorghum | extracellular, golgi | 70.89 | 68.92 |
| PGSC0003DMT400041534 | Potato | cytosol | 16.61 | 64.14 |
| GSMUA_Achr3P19840_001 | Banana | endoplasmic reticulum, golgi, plastid | 68.21 | 63.99 |
| Solyc12g009700.1.1 | Tomato | extracellular, plasma membrane | 31.96 | 58.5 |
| Solyc12g009760.1.1 | Tomato | extracellular | 12.5 | 56.45 |
| AT3G61050.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 33.75 | 37.06 |
| AT5G04220.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 30.36 | 31.48 |
| AT1G20080.3 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 30.0 | 31.28 |
| AT2G21010.1 | Thale cress | cytosol | 13.93 | 30.47 |
| AT2G20990.3 | Thale cress | endoplasmic reticulum, extracellular | 31.07 | 30.05 |
| AT3G61030.1 | Thale cress | mitochondrion | 22.86 | 25.15 |
| AT3G60950.1 | Thale cress | mitochondrion | 23.39 | 20.89 |
| AT2G21040.1 | Thale cress | cytosol | 6.96 | 14.94 |
Protein Annotations
| Gene3D:2.60.40.150 | MapMan:35.1 | EntrezGene:837052 | ProteinID:AAF79726.1 | ProteinID:AEE27846.1 | EMBL:AK228581 |
| ProteinID:ANM58571.1 | ArrayExpress:AT1G05500 | EnsemblPlantsGene:AT1G05500 | RefSeq:AT1G05500 | TAIR:AT1G05500 | RefSeq:AT1G05500-TAIR-G |
| EnsemblPlants:AT1G05500.1 | TAIR:AT1G05500.1 | EMBL:AY140038 | Unigene:At.27942 | EMBL:BT008907 | InterPro:C2_dom |
| InterPro:C2_domain_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006869 | GO:GO:0008150 |
| GO:GO:0008289 | GO:GO:0009506 | GO:GO:0012505 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 |
| InterPro:IPR000008 | InterPro:IPR031468 | InterPro:IPR035892 | RefSeq:NP_001320996.1 | RefSeq:NP_172041.2 | PFAM:PF00168 |
| PFAM:PF17047 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00360 | PFscan:PS50004 | PFscan:PS51847 |
| PANTHER:PTHR10774 | PANTHER:PTHR10774:SF166 | UniProt:Q8L706 | SMART:SM00239 | InterPro:SMP_LBD | SUPFAM:SSF49562 |
| Symbol:SYTE | InterPro:Synaptotagmin_SMP | TMHMM:TMhelix | UniParc:UPI000009E25E | SEG:seg | : |
Description
SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
Coordinates
chr1:+:1624919..1629289
Molecular Weight (calculated)
62932.3 Da
IEP (calculated)
5.609
GRAVY (calculated)
-0.062
Length
560 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.