Factsheet for PGSC0003DMT400041534

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054286	Potato	extracellular	23.45	48.57
PGSC0003DMT400068835	Potato	extracellular	23.45	48.57
Solyc12g009760.1.1	Tomato	extracellular	26.21	30.65
PGSC0003DMT400078829	Potato	extracellular, plasma membrane	52.41	29.46
PGSC0003DMT400020478	Potato	cytosol	72.41	24.65
VIT_11s0118g00230.t01	Wine grape	endoplasmic reticulum, extracellular	71.03	18.17
KRH03623	Soybean	endoplasmic reticulum	73.1	17.85
GSMUA_Achr1P26040_001	Banana	endoplasmic reticulum, golgi	68.28	17.71
PGSC0003DMT400036226	Potato	endoplasmic reticulum	66.9	17.57
TraesCS2A01G517200.1	Wheat	endoplasmic reticulum, extracellular, plastid	68.28	17.37
CDY47278	Canola	endoplasmic reticulum, extracellular	66.9	17.35
Bra015431.1-P	Field mustard	endoplasmic reticulum, extracellular	66.9	17.35
HORVU2Hr1G114590.1	Barley	endoplasmic reticulum, extracellular, plastid	67.59	17.19
TraesCS2B01G545700.3	Wheat	endoplasmic reticulum, extracellular, plastid	67.59	17.19
TraesCS2D01G518800.1	Wheat	endoplasmic reticulum, extracellular, plastid	67.59	17.19
CDY15543	Canola	endoplasmic reticulum, extracellular	66.21	16.84
Zm00001d002090_P001	Maize	endoplasmic reticulum, extracellular, plastid	66.9	16.84
GSMUA_Achr7P05380_001	Banana	endoplasmic reticulum	67.59	16.81
CDY10116	Canola	endoplasmic reticulum, extracellular	66.21	16.7
CDX86575	Canola	endoplasmic reticulum, extracellular	66.21	16.64
AT1G05500.1	Thale cress	endoplasmic reticulum, extracellular	64.14	16.61
EES11541	Sorghum	extracellular, golgi	65.52	16.49
GSMUA_Achr3P19840_001	Banana	endoplasmic reticulum, golgi, plastid	66.9	16.25
Bra030612.1-P	Field mustard	endoplasmic reticulum, extracellular	64.83	14.73
PGSC0003DMT400035570	Potato	cytosol	35.17	13.64
PGSC0003DMT400026606	Potato	cytosol, endoplasmic reticulum, mitochondrion, plastid	38.62	11.62
PGSC0003DMT400055528	Potato	mitochondrion	33.1	8.81
PGSC0003DMT400015793	Potato	endoplasmic reticulum	32.41	8.72
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	27.59	7.42
PGSC0003DMT400046490	Potato	cytosol	0.69	1.19
PGSC0003DMT400078832	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400041534	EnsemblPlantsGene:PGSC0003DMG400016098	Gene3D:2.60.40.150	InterPro:C2_domain_sf	InterPro:IPR035892	PANTHER:PTHR10774
PANTHER:PTHR10774:SF167	PGSC:PGSC0003DMG400016098	SEG:seg	SUPFAM:SSF49562	UniParc:UPI000295AF7C	UniProt:M1BBH1
MapMan:35.1	:	:	:	:	:

Description

Calcium lipid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016098]

Coordinates

chr8:+:26753442..26755245

Molecular Weight (calculated)

15933.6 Da

IEP (calculated)

6.751

GRAVY (calculated)

0.009

Length

145 amino acids

Sequence
(BLAST)

001: MRSSSSRSSS SGISIIEDGS EGIPMELEMQ WDGNPRKILD IKTYVGVALP VQKKKLDFML KVIGGDLTTI PGLCDAIKGT IRDSIEDSIT WLARKVIPIL
101: TGDYSDLELK LTGVLEVKLV QAKELTNKDL IGKSNPFVVL YVRPL

Best Arabidopsis Sequence Match ( AT1G05500.1 )
(BLAST)

001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS

Arabidopsis Description

SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.