Factsheet for AT1G20080.3

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

plastid 1
cytosol 2
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43415	Canola	endoplasmic reticulum, extracellular	93.3	93.12
Bra012209.1-P	Field mustard	cytosol	65.92	91.71
CDY57593	Canola	endoplasmic reticulum, extracellular	92.92	90.4
CDY54339	Canola	endoplasmic reticulum, extracellular	91.25	89.25
Bra016478.1-P	Field mustard	endoplasmic reticulum, extracellular	84.54	89.19
CDY62938	Canola	endoplasmic reticulum, extracellular	91.06	89.07
VIT_18s0001g14630.t01	Wine grape	endoplasmic reticulum, extracellular	77.28	76.99
KRH17448	Soybean	mitochondrion	75.05	74.91
KRH05967	Soybean	endoplasmic reticulum, extracellular	74.86	74.72
GSMUA_Achr4P25570_001	Banana	endoplasmic reticulum, extracellular	73.56	73.42
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	71.32	71.19
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	69.09	69.74
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	68.9	68.65
HORVU5Hr1G084010.1	Barley	endoplasmic reticulum, extracellular	68.16	67.9
OQU92056	Sorghum	endoplasmic reticulum	67.97	67.72
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	66.11	67.62
EER99265	Sorghum	endoplasmic reticulum	67.78	67.53
Zm00001d006238_P001	Maize	plasma membrane	67.41	67.16
TraesCS5A01G330400.1	Wheat	golgi	67.04	66.79
TraesCS5D01G336200.1	Wheat	endoplasmic reticulum	67.04	66.79
TraesCS5B01G330600.1	Wheat	endoplasmic reticulum	67.04	65.1
Zm00001d030116_P001	Maize	cytosol	36.69	65.02
AT2G20990.3	Thale cress	endoplasmic reticulum, extracellular	66.85	62.0
GSMUA_Achr1P26490_001	Banana	cytosol, mitochondrion	60.15	60.83
AT2G21010.1	Thale cress	cytosol	28.49	59.77
TraesCS5D01G336100.1	Wheat	cytosol	33.71	58.58
TraesCS5B01G330500.1	Wheat	cytosol	31.66	57.82
HORVU5Hr1G084020.3	Barley	cytosol	23.46	57.8
Zm00001d022625_P006	Maize	cytosol, peroxisome, plastid	66.11	55.56
AT5G04220.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	51.02	50.74
AT1G05500.1	Thale cress	endoplasmic reticulum, extracellular	31.28	30.0
AT2G21040.1	Thale cress	cytosol	13.59	27.97
AT3G61050.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	23.84	25.1
AT3G61030.1	Thale cress	mitochondrion	16.76	17.68
AT3G60950.1	Thale cress	mitochondrion	17.32	14.83

Protein Annotations

Gene3D:2.60.40.150	MapMan:5.8.1.2	EntrezGene:838597	ProteinID:AAF79904.1	ProteinID:AEE29933.1	ProteinID:ANM60121.1
ProteinID:ANM60122.1	ProteinID:ANM60123.1	ProteinID:ANM60124.1	ArrayExpress:AT1G20080	EnsemblPlantsGene:AT1G20080	RefSeq:AT1G20080
TAIR:AT1G20080	RefSeq:AT1G20080-TAIR-G	EnsemblPlants:AT1G20080.3	Unigene:At.41723	UniProt:B6ETT4	InterPro:C2_dom
InterPro:C2_domain_sf	EMBL:FM213366	GO:GO:0000139	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006869
GO:GO:0008150	GO:GO:0008289	GO:GO:0009306	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0046872	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	RefSeq:NP_001319049.1	RefSeq:NP_001322429.1
RefSeq:NP_001322430.1	RefSeq:NP_001322431.1	RefSeq:NP_173436.4	PFAM:PF00168	PFAM:PF17047	PRINTS:PR00360
PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF50	SMART:SM00239	InterPro:SMP_LBD
SUPFAM:SSF49562	Symbol:SYTB	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI000181E97B	SEG:seg

Description

SYT2Synaptotagmin-2 [Source:UniProtKB/Swiss-Prot;Acc:B6ETT4]

Coordinates

chr1:+:6962037..6965443

Molecular Weight (calculated)

60840.3 Da

IEP (calculated)

5.607

GRAVY (calculated)

-0.204

Length

537 amino acids

Sequence
(BLAST)

001: MGIISTILGV IGFGFGTTIG IVIGYYLFIY FQSTDVEDPE IKPLVELDSE TIATMFPEIP MWVKNPDFDR IDWLNKLIGH MWPYMDKAIC KMAKSIAKPI
101: IAEQIPNYKI DSVEFEMLTL GSLPPSFQGM KVYATDDKEI IMELSVKWAG NPNIIVVAKA FGLKATVQVI DLQVYATPRI TLKPLVPSFP CFANIFVSLM
201: DKPQVDFGLK LLGADVMAIP GLYRFVQEII KDQVANMYLW PKTLNVQIMD PSKAMKKPVG LLSVKVIKAI KLKKKDLLGG SDPYVKLTLS GDKVPGKKTV
301: VKHSNLNPEW NEEFDLVVKE PESQELQLIV YDWEQVGKHD KIGMNVIQLK DLTPEEPKLM TLELLKSMEP KEPVSEKSRG QLVVEVEYKP FKDDDIPENI
401: DDPNAVEKAP EGTPSTGGLL VVIVHEAEDL EGKYHTNPSV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISSSSRL IHPKETLGYV
501: VINLGDVVSN RRINDKYHLI DSKNGRIQIE LQWRNSS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.