Factsheet for Zm00001d006238_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
golgi 4
plasma membrane 4
endoplasmic reticulum 6
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

extracellular: 20408568
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99265	Sorghum	endoplasmic reticulum	97.22	97.22
Os09t0538800-01	Rice	plasma membrane	91.47	91.47
Zm00001d030116_P001	Maize	cytosol	50.83	90.43
TraesCS5D01G336200.1	Wheat	endoplasmic reticulum	87.38	87.38
HORVU5Hr1G084010.1	Barley	endoplasmic reticulum, extracellular	86.64	86.64
TraesCS5A01G330400.1	Wheat	golgi	86.46	86.46
TraesCS5B01G330600.1	Wheat	endoplasmic reticulum	87.57	85.35
Zm00001d022625_P006	Maize	cytosol, peroxisome, plastid	94.62	79.81
TraesCS5B01G330500.1	Wheat	cytosol	43.23	79.25
TraesCS5D01G336100.1	Wheat	cytosol	45.08	78.64
Os01t0819200-00	Rice	endoplasmic reticulum, extracellular	44.34	78.36
VIT_18s0001g14630.t01	Wine grape	endoplasmic reticulum, extracellular	75.32	75.32
HORVU5Hr1G084020.3	Barley	cytosol	30.24	74.77
PGSC0003DMT400015793	Potato	endoplasmic reticulum	73.47	73.47
Solyc01g111520.2.1	Tomato	nucleus	73.1	73.1
KRH29282	Soybean	endoplasmic reticulum	72.36	72.36
KRH05967	Soybean	endoplasmic reticulum, extracellular	71.43	71.56
VIT_03s0038g02330.t01	Wine grape	endoplasmic reticulum	71.43	71.43
KRH24304	Soybean	endoplasmic reticulum	71.43	71.43
KRH17448	Soybean	mitochondrion	71.24	71.38
KRH51399	Soybean	endoplasmic reticulum, extracellular, plasma membrane	70.5	70.9
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	70.5	70.5
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	67.9	69.71
CDX81995	Canola	endoplasmic reticulum, extracellular	68.46	68.21
CDY43415	Canola	endoplasmic reticulum, extracellular	67.9	68.03
Bra031157.1-P	Field mustard	endoplasmic reticulum, extracellular	68.27	68.02
CDY13846	Canola	endoplasmic reticulum, extracellular	68.27	68.02
AT1G20080.3	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	67.16	67.41
Bra016478.1-P	Field mustard	endoplasmic reticulum, extracellular	63.45	67.19
CDY62938	Canola	endoplasmic reticulum, extracellular	68.27	67.03
CDY54339	Canola	endoplasmic reticulum, extracellular	68.27	67.03
CDY57593	Canola	endoplasmic reticulum, extracellular	67.9	66.3
Bra012209.1-P	Field mustard	cytosol	46.94	65.54
AT2G20990.3	Thale cress	endoplasmic reticulum, extracellular	68.27	63.56
AT2G21010.1	Thale cress	cytosol	28.01	58.98
Zm00001d014499_P004	Maize	endoplasmic reticulum, extracellular	42.67	46.28
Zm00001d002090_P001	Maize	endoplasmic reticulum, extracellular, plastid	28.94	27.08
Zm00001d007034_P008	Maize	endoplasmic reticulum, extracellular, plasma membrane	28.76	26.41
AT2G21040.1	Thale cress	cytosol	12.62	26.05
Zm00001d028437_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	24.68	25.63
Zm00001d019472_P005	Maize	endoplasmic reticulum, mitochondrion, plasma membrane	24.68	24.86

Protein Annotations

EntrezGene:100285684	Gene3D:2.60.40.150	MapMan:5.8.1.2	UniProt:B6TBV7	InterPro:C2_dom	InterPro:C2_domain_sf
EMBL:EU962472	EMBL:EU973421	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810
GO:GO:0006869	GO:GO:0008150	GO:GO:0008289	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008
InterPro:IPR031468	InterPro:IPR035892	ProteinID:ONM23157.1	ProteinID:ONM23162.1	PFAM:PF00168	PFAM:PF17047
PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF50	SMART:SM00239
InterPro:SMP_LBD	SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI000182C7A2	EnsemblPlantsGene:Zm00001d006238
EnsemblPlants:Zm00001d006238_P001	EnsemblPlants:Zm00001d006238_T001	SEG:seg	:	:	:

Description

Calcium lipid binding protein-like

Coordinates

chr2:-:202615728..202622551

Molecular Weight (calculated)

61016.2 Da

IEP (calculated)

6.738

GRAVY (calculated)

-0.269

Length

539 amino acids

Sequence
(BLAST)

001: MGVISTVLGF SGFGFGFSAG IVIGYFLFIY VQPTDVKDVK VRPLVEYDSK SLEGILPEIP LWVKNPDYDR IDWLNRFLEL MWPYLNKAIC RTAQDIAKPI
101: IAENTAKYKI DSVEFESLTL GSLPPTFQGM KVYVTEEQEL IMEPSLKWAA NPNITVAVKA YGLKATIQIV DLQVFASPRI TLKPLVPTFP CFAKILVSLM
201: EKPHVDFGLK LLGADVMAIP GLYRFVQETI KKQVASMYLW PKTLEVPIMD PSKASKRPVG ILLVKVVRAQ NLRKKDLLGK SDPYVKLKMS DDKLPSKKTT
301: VKRSNLNPEW GEDFKFVVTD PENQALEVNV FDWEQVGKHE KMGMNMIPLR ELLPEGTKVT TLNLLKTMDP NDVQNEKSRG ELTLELTYKP FKEEDIEKED
401: TQGADVIEKA PDGTPAGGGL LYVVVHEAQD LEGKHHTNPY AKIIFKGEEK KTKVIKKNRD PRWEDEFEFV CEEPPVNDKL HVEVISKAPK AGLIHGKETL
501: GYIDISLADV ISNKRINEKY HLIDSKNGQI QIELQWRTS

Best Arabidopsis Sequence Match ( AT2G20990.1 )
(BLAST)

001: MGFFSTILGF CGFGVGISLG LVIGYVLFVY LLPNDVKDPE IRSIADQDPK AMLRMLPEIP LWVKNPDFDR VDWINRFLEY MWPYLDKAIC KTAKNIAKPI
101: IEEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNILVAIKA FGLKATVQVV DLQVFAQPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDLMGG ADPFVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEFKFSVRD PQTQVLEFSV YDWEQVGNPE KMGMNVLALK EMVPDEHKAF TLELRKTLDG GEDGQPPDKY RGKLEVELLY KPFTEEEMPK
401: GFEETQAVQK APEGTPAAGG MLVVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWNEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTA S

Arabidopsis Description

SYTASynaptotagmin A [Source:UniProtKB/TrEMBL;Acc:F4IFM6]
SUBAcon: [extracellular,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.