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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • plastid 1
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:cytosol, plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY62938 Canola endoplasmic reticulum, extracellular 98.0 98.0
CDY43415 Canola endoplasmic reticulum, extracellular 90.16 92.01
AT1G20080.3 Thale cress endoplasmic reticulum, extracellular, plasma membrane 89.25 91.25
CDY57593 Canola endoplasmic reticulum, extracellular 89.8 89.31
VIT_18s0001g14630.t01 Wine grape endoplasmic reticulum, extracellular 75.77 77.18
KRH17448 Soybean mitochondrion 73.41 74.91
KRH05967 Soybean endoplasmic reticulum, extracellular 73.04 74.54
GSMUA_Achr4P25570_001 Banana endoplasmic reticulum, extracellular 71.95 73.42
GSMUA_AchrUn_... Banana endoplasmic reticulum 69.95 71.38
PGSC0003DMT400075422 Potato endoplasmic reticulum, extracellular 68.12 69.39
GSMUA_AchrUn_... Banana endoplasmic reticulum 66.85 68.98
OQU92056 Sorghum endoplasmic reticulum 67.21 68.46
EER99265 Sorghum endoplasmic reticulum 67.03 68.27
Zm00001d006238_P001 Maize plasma membrane 67.03 68.27
HORVU5Hr1G084010.1 Barley endoplasmic reticulum, extracellular 66.85 68.09
Solyc12g089330.1.1 Tomato endoplasmic reticulum, extracellular 64.85 67.81
CDY13846 Canola endoplasmic reticulum, extracellular 66.48 67.47
CDX81995 Canola endoplasmic reticulum, extracellular 66.48 67.47
TraesCS5A01G330400.1 Wheat golgi 65.94 67.16
TraesCS5D01G336200.1 Wheat endoplasmic reticulum 65.76 66.98
Zm00001d030116_P001 Maize cytosol 36.61 66.34
TraesCS5B01G330600.1 Wheat endoplasmic reticulum 65.76 65.28
GSMUA_Achr1P26490_001 Banana cytosol, mitochondrion 59.38 61.39
TraesCS5D01G336100.1 Wheat cytosol 33.33 59.22
HORVU5Hr1G084020.3 Barley cytosol 23.13 58.26
TraesCS5B01G330500.1 Wheat cytosol 31.15 58.16
Zm00001d022625_P006 Maize cytosol, peroxisome, plastid 65.39 56.18
CDY41389 Canola endoplasmic reticulum, extracellular, plasma membrane 49.91 50.37
CDX70250 Canola endoplasmic reticulum, extracellular 49.73 49.91
CDY47278 Canola endoplasmic reticulum, extracellular 31.15 30.59
CDY15543 Canola endoplasmic reticulum, extracellular 30.97 29.82
CDY10116 Canola endoplasmic reticulum, extracellular 31.15 29.74
CDX85729 Canola endoplasmic reticulum, extracellular, plastid 29.87 29.6
CDX86575 Canola endoplasmic reticulum, extracellular 30.97 29.46
CDY51108 Canola endoplasmic reticulum, extracellular, plastid 29.87 29.18
CDY45675 Canola endoplasmic reticulum, extracellular 24.41 26.53
CDY42483 Canola endoplasmic reticulum, extracellular 22.22 25.74
CDX67848 Canola endoplasmic reticulum, extracellular, plasma membrane 22.22 25.74
CDX89094 Canola endoplasmic reticulum, extracellular, plasma membrane 22.04 25.53
Protein Annotations
Gene3D:2.60.40.150MapMan:5.8.1.2GO:A0A078IYC1UniProt:A0A078IYC1InterPro:C2_domInterPro:C2_domain_sf
EnsemblPlants:CDY54339ProteinID:CDY54339ProteinID:CDY54339.1GO:GO:0003674GO:GO:0005488GO:GO:0005575
GO:GO:0006810GO:GO:0006869GO:GO:0008150GO:GO:0008289GO:GO:0016020GO:GO:0016021
EnsemblPlantsGene:GSBRNA2T00013902001InterPro:IPR000008InterPro:IPR031468InterPro:IPR035892PFAM:PF00168PFAM:PF17047
PRINTS:PR00360PFscan:PS50004PFscan:PS51847PANTHER:PTHR10774PANTHER:PTHR10774:SF50SMART:SM00239
InterPro:SMP_LBDSUPFAM:SSF49562InterPro:Synaptotagmin_SMPTMHMM:TMhelixUniParc:UPI0004EE8422SEG:seg
Description
BnaCnng26850DBnaCnng26850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYC1]
Coordinates
chrLK033305:-:63054..65859
Molecular Weight (calculated)
62040.5 Da
IEP (calculated)
5.448
GRAVY (calculated)
-0.194
Length
549 amino acids
Sequence
(BLAST)
001: MGIISTILGT FGFGFGTTIG ILIGYYLFIY HQSTDVQASS NLLLNSLDPE IKPLMELDSE AIAKMFPEIP LWVKNPDFDR IDWLNKLIGY MWPYLDKAIS
101: NMAKSIAKPI IAEQIPNYKI DSVEFEMLTL GSLPPTFQGM KVYATDNKEL IMELSVKWAG NPNILVAAKA FGLKATVQVV DLQVYATPRI TLKPLVPSFP
201: CFANIFVSLM DKPQVDFGLK LLGADVMAIP GLYRFVQELI KDQVANMYLW PKTLCVQIMD PSTAMKKPVG LLNVNVIKAI KLKKKDFLGG SDPYVKLTLS
301: GDRVPGKKTV VKHSNLNPEW NEEFDLVVKD PESQELHLIV YDWEQVGKHD KIEMNVIPLK DLTPEEPKLM TLELLKSMEP NEPVSEKSRG QLVVEVEYKP
401: FKEDNIPDNL DDPNAVEKAP EGTPSGGGLL VVIVHEAEDL EGKYHTNPYV RLLFKGEERK TKRVKKNREP RWDEDFQFPL DEPPVNDKLH VEVISTSSRM
501: GLIQSKEALG YVVINLADVV SNRRINDKYH LIDSKNGRVQ IELQWRTSS
Best Arabidopsis Sequence Match ( AT1G20080.2 )
(BLAST)
001: MGIISTILGV IGFGFGTTIG IVIGYYLFIY FQSTDVEDPE IKPLVELDSE TIATMFPEIP MWVKNPDFDR IDWLNKLIGH MWPYMDKAIC KMAKSIAKPI
101: IAEQIPNYKI DSVEFEMLTL GSLPPSFQGM KVYATDDKEI IMELSVKWAG NPNIIVVAKA FGLKATVQVI DLQVYATPRI TLKPLVPSFP CFANIFVSLM
201: DKPQVDFGLK LLGADVMAIP GLYRFVQEII KDQVANMYLW PKTLNVQIMD PSKAMKKPVG LLSVKVIKAI KLKKKDLLGG SDPYVKLTLS GDKVPGKKTV
301: VKHSNLNPEW NEEFDLVVKE PESQELQLIV YDWEQVGKHD KIGMNVIQLK DLTPEEPKLM TLELLKSMEP KEPVSEKSRG QLVVEVEYKP FKDDDIPENI
401: DDPNAVEKAP EGTPSTGGLL VVIVHEAEDL EGKYHTNPSV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISSSSRL IHPKETLGYV
501: VINLGDVVSN RRINDKYHLI DSKNGRIQIE LQWRNSS
Arabidopsis Description
SYT2Synaptotagmin-2 [Source:UniProtKB/Swiss-Prot;Acc:B6ETT4]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.