Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13846 | Canola | endoplasmic reticulum, extracellular | 98.52 | 98.52 |
| AT2G20990.3 | Thale cress | endoplasmic reticulum, extracellular | 92.42 | 86.36 |
| AT2G21010.1 | Thale cress | cytosol | 39.74 | 83.98 |
| KRH29282 | Soybean | endoplasmic reticulum | 74.12 | 74.4 |
| PGSC0003DMT400015793 | Potato | endoplasmic reticulum | 74.12 | 74.4 |
| Solyc01g111520.2.1 | Tomato | nucleus | 73.94 | 74.21 |
| KRH24304 | Soybean | endoplasmic reticulum | 73.01 | 73.28 |
| VIT_03s0038g02330.t01 | Wine grape | endoplasmic reticulum | 73.01 | 73.28 |
| KRH51399 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 70.24 | 70.9 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 69.13 | 70.3 |
| GSMUA_Achr4P25570_001 | Banana | endoplasmic reticulum, extracellular | 69.32 | 69.7 |
| EER99265 | Sorghum | endoplasmic reticulum | 69.32 | 69.57 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 68.58 | 68.96 |
| OQU92056 | Sorghum | endoplasmic reticulum | 68.39 | 68.65 |
| Zm00001d006238_P001 | Maize | plasma membrane | 68.21 | 68.46 |
| CDY43415 | Canola | endoplasmic reticulum, extracellular | 67.1 | 67.47 |
| TraesCS5D01G336200.1 | Wheat | endoplasmic reticulum | 66.91 | 67.16 |
| HORVU5Hr1G084010.1 | Barley | endoplasmic reticulum, extracellular | 66.73 | 66.98 |
| CDY54339 | Canola | endoplasmic reticulum, extracellular | 67.47 | 66.48 |
| TraesCS5A01G330400.1 | Wheat | golgi | 66.17 | 66.42 |
| CDY62938 | Canola | endoplasmic reticulum, extracellular | 67.28 | 66.3 |
| TraesCS5B01G330600.1 | Wheat | endoplasmic reticulum | 67.1 | 65.64 |
| CDY57593 | Canola | endoplasmic reticulum, extracellular | 66.54 | 65.22 |
| Zm00001d030116_P001 | Maize | cytosol | 34.94 | 62.38 |
| GSMUA_Achr1P26490_001 | Banana | cytosol, mitochondrion | 58.6 | 59.7 |
| TraesCS5D01G336100.1 | Wheat | cytosol | 32.53 | 56.96 |
| Zm00001d022625_P006 | Maize | cytosol, peroxisome, plastid | 67.1 | 56.81 |
| TraesCS5B01G330500.1 | Wheat | cytosol | 30.5 | 56.12 |
| HORVU5Hr1G084020.3 | Barley | cytosol | 22.0 | 54.59 |
| CDY41389 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 51.57 | 51.29 |
| CDX70250 | Canola | endoplasmic reticulum, extracellular | 51.76 | 51.19 |
| Os01t0819300-01 | Rice | cytosol, mitochondrion, plastid | 9.24 | 43.48 |
| AT2G21040.1 | Thale cress | cytosol | 15.53 | 32.18 |
| CDX85729 | Canola | endoplasmic reticulum, extracellular, plastid | 31.05 | 30.32 |
| CDY47278 | Canola | endoplasmic reticulum, extracellular | 31.24 | 30.23 |
| CDY51108 | Canola | endoplasmic reticulum, extracellular, plastid | 31.05 | 29.89 |
| CDY15543 | Canola | endoplasmic reticulum, extracellular | 31.42 | 29.82 |
| CDX86575 | Canola | endoplasmic reticulum, extracellular | 31.61 | 29.64 |
| CDY10116 | Canola | endoplasmic reticulum, extracellular | 31.24 | 29.39 |
| CDY45675 | Canola | endoplasmic reticulum, extracellular | 23.29 | 24.95 |
| CDY42483 | Canola | endoplasmic reticulum, extracellular | 21.81 | 24.89 |
| CDX89094 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 21.63 | 24.68 |
| CDX67848 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 21.44 | 24.47 |
Protein Annotations
| Gene3D:2.60.40.150 | MapMan:5.8.1.2 | GO:A0A078CYV3 | unigene:Bna.2330 | InterPro:C2_dom | InterPro:C2_domain_sf |
| EnsemblPlants:CDX81995 | ProteinID:CDX81995 | ProteinID:CDX81995.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016310 |
| GO:GO:0016740 | EnsemblPlantsGene:GSBRNA2T00136971001 | InterPro:IPR000008 | InterPro:IPR031468 | InterPro:IPR035892 | PFAM:PF00168 |
| PFAM:PF17047 | PRINTS:PR00360 | PFscan:PS50004 | PFscan:PS51847 | PANTHER:PTHR10774 | PANTHER:PTHR10774:SF50 |
| SMART:SM00239 | InterPro:SMP_LBD | SUPFAM:SSF49562 | InterPro:Synaptotagmin_SMP | TMHMM:TMhelix | UniParc:UPI0004EEAD27 |
Description
BnaC08g36060D
Coordinates
chrLK031826:+:1815446..1818292
Molecular Weight (calculated)
61873.6 Da
IEP (calculated)
7.708
GRAVY (calculated)
-0.303
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFFSTILGL CGFGIGISMG LVIGYFLFVY LQPNDVKDPQ IQSIAEQDPK SMLRMLPEIP LWVKNPDFDR VDWINKFLEY MWPYLDKAIC KTARNIAKPI
101: IEEQIPKYKI DSVDFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNVLLAVKA FGLKATVQVV DLQVFALPRI TLKPLVPSFP CFATIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDMMGG ADPYVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEHKFSVRD PQTQVLEFSV YDWEQLGKHD KMGMNVLPLK EMVPNEHKTF TLELRKTMEG AEEGVQPDKD RGKLEVELLY KPFTEEEMPK
401: GFEESQSVQK APEGTPAGGG VLAVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWEEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTT S
101: IEEQIPKYKI DSVDFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNVLLAVKA FGLKATVQVV DLQVFALPRI TLKPLVPSFP CFATIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDMMGG ADPYVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEHKFSVRD PQTQVLEFSV YDWEQLGKHD KMGMNVLPLK EMVPNEHKTF TLELRKTMEG AEEGVQPDKD RGKLEVELLY KPFTEEEMPK
401: GFEESQSVQK APEGTPAGGG VLAVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWEEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTT S
001: MGFFSTILGF CGFGVGISLG LVIGYVLFVY LLPNDVKDPE IRSIADQDPK AMLRMLPEIP LWVKNPDFDR VDWINRFLEY MWPYLDKAIC KTAKNIAKPI
101: IEEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNILVAIKA FGLKATVQVV DLQVFAQPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDLMGG ADPFVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEFKFSVRD PQTQVLEFSV YDWEQVGNPE KMGMNVLALK EMVPDEHKAF TLELRKTLDG GEDGQPPDKY RGKLEVELLY KPFTEEEMPK
401: GFEETQAVQK APEGTPAAGG MLVVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWNEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTA S
101: IEEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNILVAIKA FGLKATVQVV DLQVFAQPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDLMGG ADPFVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEFKFSVRD PQTQVLEFSV YDWEQVGNPE KMGMNVLALK EMVPDEHKAF TLELRKTLDG GEDGQPPDKY RGKLEVELLY KPFTEEEMPK
401: GFEETQAVQK APEGTPAAGG MLVVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWNEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTA S
Arabidopsis Description
SYTASynaptotagmin A [Source:UniProtKB/TrEMBL;Acc:F4IFM6]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.