Factsheet for AT2G20990.3

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

cytosol 1
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031157.1-P	Field mustard	endoplasmic reticulum, extracellular	87.05	93.16
CDY13846	Canola	endoplasmic reticulum, extracellular	87.05	93.16
CDX81995	Canola	endoplasmic reticulum, extracellular	86.36	92.42
AT2G21010.1	Thale cress	cytosol	38.86	87.89
KRH29282	Soybean	endoplasmic reticulum	68.91	74.03
PGSC0003DMT400015793	Potato	endoplasmic reticulum	68.74	73.84
Solyc01g111520.2.1	Tomato	nucleus	68.39	73.47
VIT_03s0038g02330.t01	Wine grape	endoplasmic reticulum	68.05	73.1
KRH24304	Soybean	endoplasmic reticulum	68.05	73.1
KRH51399	Soybean	endoplasmic reticulum, extracellular, plasma membrane	64.94	70.15
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	64.08	69.74
GSMUA_Achr4P25570_001	Banana	endoplasmic reticulum, extracellular	64.77	69.7
EER99265	Sorghum	endoplasmic reticulum	64.59	69.39
OQU92056	Sorghum	endoplasmic reticulum	64.08	68.83
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	63.9	68.77
Zm00001d006238_P001	Maize	plasma membrane	63.56	68.27
TraesCS5D01G336200.1	Wheat	endoplasmic reticulum	62.87	67.53
HORVU5Hr1G084010.1	Barley	endoplasmic reticulum, extracellular	62.69	67.35
AT1G20080.3	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	62.0	66.85
TraesCS5A01G330400.1	Wheat	golgi	62.18	66.79
TraesCS5B01G330600.1	Wheat	endoplasmic reticulum	63.04	66.0
Zm00001d030116_P001	Maize	cytosol	32.47	62.05
GSMUA_Achr1P26490_001	Banana	cytosol, mitochondrion	54.4	59.32
Zm00001d022625_P006	Maize	cytosol, peroxisome, plastid	62.69	56.81
TraesCS5D01G336100.1	Wheat	cytosol	30.22	56.63
TraesCS5B01G330500.1	Wheat	cytosol	28.32	55.78
HORVU5Hr1G084020.3	Barley	cytosol	20.73	55.05
AT5G04220.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	47.67	51.11
Os01t0819300-01	Rice	cytosol, mitochondrion, plastid	8.64	43.48
AT2G21040.1	Thale cress	cytosol	15.2	33.72
AT1G05500.1	Thale cress	endoplasmic reticulum, extracellular	30.05	31.07
AT3G61050.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	22.28	25.29
AT3G61030.1	Thale cress	mitochondrion	15.54	17.68
AT3G60950.1	Thale cress	mitochondrion	15.37	14.19

Protein Annotations

Gene3D:2.60.40.150	MapMan:5.8.1.2	EntrezGene:816633	ProteinID:AEC07111.1	ArrayExpress:AT2G20990	EnsemblPlantsGene:AT2G20990
RefSeq:AT2G20990	TAIR:AT2G20990	RefSeq:AT2G20990-TAIR-G	EnsemblPlants:AT2G20990.3	TAIR:AT2G20990.3	Unigene:At.24916
InterPro:C2_dom	InterPro:C2_domain_sf	UniProt:F4IFM6	GO:GO:0001778	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005773
GO:GO:0005783	GO:GO:0005886	GO:GO:0006612	GO:GO:0006810	GO:GO:0006869	GO:GO:0006897
GO:GO:0006950	GO:GO:0008150	GO:GO:0008289	GO:GO:0009409	GO:GO:0009506	GO:GO:0009605
GO:GO:0009612	GO:GO:0009628	GO:GO:0009898	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0032456	GO:GO:0032541	GO:GO:0046740	GO:GO:1901981	InterPro:IPR000008
InterPro:IPR031468	InterPro:IPR035892	RefSeq:NP_001189566.1	PFAM:PF00168	PFAM:PF17047	PO:PO:0000003
PO:PO:0000005	PO:PO:0000293	PO:PO:0005052	PO:PO:0007131	PO:PO:0009025	PRINTS:PR00360
PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF50	SMART:SM00239	InterPro:SMP_LBD
SUPFAM:SSF49562	Symbol:SYTA	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI0001E92CAE	:

Description

SYTASynaptotagmin A [Source:UniProtKB/TrEMBL;Acc:F4IFM6]

Coordinates

chr2:+:9014552..9018036

Molecular Weight (calculated)

66263.9 Da

IEP (calculated)

7.936

GRAVY (calculated)

-0.240

Length

579 amino acids

Sequence
(BLAST)

001: MGFFSTILGF CGFGVGISLG LVIGYVLFVY LLPNDVKDPE IRSIADQDPK AMLRMLPEIP LWVKNPDFDR VDWINRFLEY MWPYLDKAIC KTAKNIAKPI
101: IEEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNILVAIKA FGLKATVQVV DLQVFAQPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQVDI FLLHTSFKSL TCMSKNFFMR ERADETVTFR LANTYEQIKD QVANMYLWPK TLVVPILDPA KAFRRPVGIV
301: HVKVVRAVGL RKKDLMGGAD PFVKIKLSED KIPSKKTTVK HKNLNPEWNE EFKFSVRDPQ TQVLEFSVYD WEQVGNPEKM GMNVLALKEM VPDEHKAFTL
401: ELRKTLDGGE DGQPPDKYRG KLEVELLYKP FTEEEMPKGF EETQAVQKAP EGTPAAGGML VVIVHSAEDV EGKHHTNPYV RIYFKGEERK TKHVKKNRDP
501: RWNEEFTFML EEPPVREKLH VEVLSTSSRI GLLHPKETLG YVDIPVVDVV NNKRMNQKFH LIDSKNGKIQ IELEWRTAS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.