Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 4
- golgi 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014457.1-P | Field mustard | endoplasmic reticulum, extracellular | 95.1 | 96.04 |
| CDX89094 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 89.22 | 95.99 |
| CDX67848 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 89.22 | 95.99 |
| Bra003434.1-P | Field mustard | endoplasmic reticulum, extracellular | 94.71 | 95.64 |
| CDY42483 | Canola | endoplasmic reticulum, extracellular | 88.63 | 95.36 |
| CDY45675 | Canola | endoplasmic reticulum, extracellular | 93.92 | 94.85 |
| VIT_15s0048g01410.t01 | Wine grape | endoplasmic reticulum, extracellular | 77.65 | 77.19 |
| Solyc01g094030.2.1 | Tomato | plastid | 76.27 | 77.03 |
| PGSC0003DMT400035570 | Potato | cytosol | 56.47 | 77.01 |
| KRH48321 | Soybean | endoplasmic reticulum, mitochondrion | 76.67 | 74.62 |
| Solyc05g047710.2.1 | Tomato | endoplasmic reticulum, mitochondrion | 71.96 | 74.14 |
| KRH65210 | Soybean | endoplasmic reticulum, mitochondrion | 76.08 | 72.52 |
| KRH40562 | Soybean | endoplasmic reticulum | 75.88 | 72.34 |
| KRH00619 | Soybean | mitochondrion, plasma membrane | 76.27 | 71.38 |
| GSMUA_Achr2P12230_001 | Banana | endoplasmic reticulum, mitochondrion | 69.8 | 71.34 |
| Solyc10g017590.2.1 | Tomato | mitochondrion | 66.08 | 70.95 |
| PGSC0003DMT400026606 | Potato | cytosol, endoplasmic reticulum, mitochondrion, plastid | 66.67 | 70.54 |
| TraesCS2B01G262400.1 | Wheat | plasma membrane | 67.65 | 67.91 |
| TraesCS2A01G244800.1 | Wheat | plasma membrane | 67.65 | 67.91 |
| TraesCS2D01G242600.1 | Wheat | plasma membrane | 67.45 | 67.72 |
| EER96263 | Sorghum | mitochondrion, plasma membrane | 67.06 | 67.32 |
| Solyc10g052520.1.1 | Tomato | endoplasmic reticulum, extracellular | 33.92 | 67.32 |
| Os07t0409100-01 | Rice | plasma membrane | 67.45 | 66.8 |
| KRH55269 | Soybean | cytosol, plasma membrane | 33.73 | 65.65 |
| EER93061 | Sorghum | endoplasmic reticulum, mitochondrion | 64.51 | 65.28 |
| GSMUA_Achr5P04070_001 | Banana | endoplasmic reticulum, mitochondrion | 68.04 | 64.62 |
| EER92549 | Sorghum | endoplasmic reticulum, extracellular | 64.12 | 63.99 |
| Zm00001d019472_P005 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane | 66.27 | 63.18 |
| Zm00001d028437_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 63.92 | 62.81 |
| TraesCS4D01G223100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 63.33 | 62.72 |
| TraesCS4B01G222600.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 62.55 | 62.67 |
| TraesCS4A01G081200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 62.75 | 62.14 |
| HORVU4Hr1G062820.2 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 61.76 | 61.52 |
| Os03t0251600-00 | Rice | plasma membrane | 61.76 | 59.66 |
| HORVU2Hr1G052430.2 | Barley | cytosol | 41.18 | 59.49 |
| AT3G61030.1 | Thale cress | mitochondrion | 53.33 | 53.44 |
| AT3G60950.1 | Thale cress | mitochondrion | 54.71 | 44.5 |
| AT1G05500.1 | Thale cress | endoplasmic reticulum, extracellular | 37.06 | 33.75 |
| AT5G04220.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 29.02 | 27.41 |
| AT1G20080.3 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 25.1 | 23.84 |
| AT2G20990.3 | Thale cress | endoplasmic reticulum, extracellular | 25.29 | 22.28 |
| AT2G21010.1 | Thale cress | cytosol | 8.63 | 17.19 |
| AT2G21040.1 | Thale cress | cytosol | 2.16 | 4.21 |
Protein Annotations
| Gene3D:2.60.40.150 | MapMan:35.1 | EntrezGene:825277 | ProteinID:AEE80144.1 | ProteinID:AEE80145.1 | EMBL:AK227322 |
| ArrayExpress:AT3G61050 | EnsemblPlantsGene:AT3G61050 | RefSeq:AT3G61050 | TAIR:AT3G61050 | RefSeq:AT3G61050-TAIR-G | EnsemblPlants:AT3G61050.2 |
| TAIR:AT3G61050.2 | EMBL:BT004564 | InterPro:C2_dom | InterPro:C2_domain_sf | ProteinID:CAB94141.1 | InterPro:CLB_plant |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006810 | GO:GO:0006869 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009414 | GO:GO:0009605 |
| GO:GO:0009606 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009958 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0031965 | GO:GO:0043565 | GO:GO:0045892 | InterPro:IPR000008 | InterPro:IPR031468 |
| InterPro:IPR035892 | RefSeq:NP_001030908.1 | RefSeq:NP_191664.1 | Symbol:NTMC2TYPE4 | PFAM:PF00168 | PFAM:PF17047 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0005052 |
| PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0025195 | PO:PO:0025281 |
| PRINTS:PR00360 | PFscan:PS50004 | PFscan:PS51847 | PANTHER:PTHR10774 | PANTHER:PTHR10774:SF51 | UniProt:Q9LEX1 |
| SMART:SM00239 | InterPro:SMP_LBD | SUPFAM:SSF49562 | InterPro:Synaptotagmin_SMP | TMHMM:TMhelix | UniParc:UPI000000C3B3 |
| SEG:seg | : | : | : | : | : |
Description
NTMC2TYPE4At3g61050 [Source:UniProtKB/TrEMBL;Acc:Q9LEX1]
Coordinates
chr3:+:22597216..22601187
Molecular Weight (calculated)
55098.4 Da
IEP (calculated)
8.578
GRAVY (calculated)
0.023
Length
510 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLISGILFG IIFGVALMAG WSRMMTHRSS KRVAKAVDMK LLGSLSRDDL KKICGDNFPQ WISFPAFEQV KWLNKLLSKM WPYIAEAATM VIRDSVEPLL
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.