Factsheet for Os07t0409100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

plasma membrane: 18260611
plasma membrane: 18557835
golgi: 25047511
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G262400.1	Wheat	plasma membrane	87.96	89.17
TraesCS2A01G244800.1	Wheat	plasma membrane	87.77	88.98
TraesCS2D01G242600.1	Wheat	plasma membrane	87.77	88.98
EER96263	Sorghum	mitochondrion, plasma membrane	86.99	88.19
Zm00001d019472_P005	Maize	endoplasmic reticulum, mitochondrion, plasma membrane	84.66	81.5
HORVU2Hr1G052430.2	Barley	cytosol	53.2	77.62
GSMUA_Achr2P12230_001	Banana	endoplasmic reticulum, mitochondrion	73.98	76.35
VIT_15s0048g01410.t01	Wine grape	endoplasmic reticulum, extracellular	70.49	70.76
KRH48321	Soybean	endoplasmic reticulum, mitochondrion	71.65	70.42
KRH65210	Soybean	endoplasmic reticulum, mitochondrion	71.84	69.16
PGSC0003DMT400035570	Potato	cytosol	49.51	68.18
Solyc01g094030.2.1	Tomato	plastid	66.8	68.12
GSMUA_Achr5P04070_001	Banana	endoplasmic reticulum, mitochondrion	70.87	67.97
Solyc05g047710.2.1	Tomato	endoplasmic reticulum, mitochondrion	65.05	67.68
Bra014457.1-P	Field mustard	endoplasmic reticulum, extracellular	66.21	67.52
AT3G61050.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	66.8	67.45
Solyc10g017590.2.1	Tomato	mitochondrion	61.94	67.16
KRH40562	Soybean	endoplasmic reticulum	69.51	66.92
CDY42483	Canola	endoplasmic reticulum, extracellular	61.55	66.88
CDX89094	Canola	endoplasmic reticulum, extracellular, plasma membrane	61.55	66.88
PGSC0003DMT400026606	Potato	cytosol, endoplasmic reticulum, mitochondrion, plastid	62.52	66.81
CDY45675	Canola	endoplasmic reticulum, extracellular	65.24	66.53
Bra003434.1-P	Field mustard	endoplasmic reticulum, extracellular	65.05	66.34
CDX67848	Canola	endoplasmic reticulum, extracellular, plasma membrane	60.58	65.82
KRH00619	Soybean	mitochondrion, plasma membrane	69.51	65.69
KRH55269	Soybean	cytosol, plasma membrane	31.26	61.45
Os03t0251600-00	Rice	plasma membrane	61.94	60.42
Solyc10g052520.1.1	Tomato	endoplasmic reticulum, extracellular	30.1	60.31
AT3G61030.1	Thale cress	mitochondrion	39.61	40.08
AT3G60950.1	Thale cress	mitochondrion	40.19	33.01
Os01t0819200-00	Rice	endoplasmic reticulum, extracellular	17.67	29.84
Os02t0448400-01	Rice	plasma membrane	26.99	25.84
Os09t0538800-01	Rice	plasma membrane	26.41	25.23
Os06t0685300-00	Rice	endoplasmic reticulum, extracellular	24.85	23.7
Os01t0819300-01	Rice	cytosol, mitochondrion, plastid	2.91	13.04
Os04t0644800-01	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	EntrezGene:4342997	ProteinID:BAC81175.1	ProteinID:BAF21353.1	ProteinID:BAT01113.1
InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:CLB_plant	ncoils:Coil	ProteinID:EEE67011.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0006139	GO:GO:0006355	GO:GO:0006810	GO:GO:0006869	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	EnsemblPlantsGene:Os07g0409100	EnsemblPlants:Os07t0409100-01	PFAM:PF00168
PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF51
UniProt:Q7XAL6	SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix
UniParc:UPI00001B61E4	RefSeq:XP_015646953.1	SEG:seg	:	:	:

Description

Similar to CLB1. (Os07t0409100-01)

Coordinates

chr7:+:12747743..12760653

Molecular Weight (calculated)

55380.7 Da

IEP (calculated)

8.881

GRAVY (calculated)

0.024

Length

515 amino acids

Sequence
(BLAST)

001: MGLISGMVMG MVVGVALMAG WSRVMQRRSR KRIAKAADIK VLGSLGRDDL KKLCGDNFPE WISFPQYEQV KWLNKHLSKL WPFVDQAATA VVKESVEPLL
101: DDYRPPGIKS LKFSKFSLGT VSPKIEGIRI QNIQPGQIIM DIDLRWGGDP SIILAVDAVV ASLPIQLKDL QVYTIVRVVF QLSEEIPCIS AVVVALLAEP
201: EPKIQYTLKA IGGSLTAVPG LSDMIDDTVN SIVSDMLKWP HRLVVPLGVN VDTSELELKP QGRLTVTVVK ATSLKNKELI GKSDPYVILY VRPMFKVKTK
301: VIDDNLNPEW NETFPLIVED KETQSVIFEV YDEDRLQQDK KLGVAKLAVN SLQPEATSEI TLKLQQSLDS LKIKDTKDRG TLHLQVTYHP FSKEEQMEAL
401: ESEKRAIEER KRLKEAGVIG STMDALGGAA SLVGSGVGLV GTGIVGGVGL VGSGIGAGVG LVGSGVGLVG SGIGAVGSGL GKAGKFMGKT VAGPFSMSRK
501: NGSSSTAPQA EQPSA

Best Arabidopsis Sequence Match ( AT3G61050.1 )
(BLAST)

001: MGLISGILFG IIFGVALMAG WSRMMTHRSS KRVAKAVDMK LLGSLSRDDL KKICGDNFPQ WISFPAFEQV KWLNKLLSKM WPYIAEAATM VIRDSVEPLL
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ

Arabidopsis Description

NTMC2TYPE4At3g61050 [Source:UniProtKB/TrEMBL;Acc:Q9LEX1]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.