Factsheet for Os02t0448400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

plasma membrane: 18260611
plasma membrane: 18557835
golgi: 25047511
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P25570_001	Banana	endoplasmic reticulum, extracellular	81.78	81.78
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	80.86	80.86
Os09t0538800-01	Rice	plasma membrane	74.16	74.03
Os01t0819200-00	Rice	endoplasmic reticulum, extracellular	37.92	66.89
Os06t0685300-00	Rice	endoplasmic reticulum, extracellular	54.46	54.26
Os01t0819300-01	Rice	cytosol, mitochondrion, plastid	9.85	46.09
Os07t0409100-01	Rice	plasma membrane	25.84	26.99
Os03t0251600-00	Rice	plasma membrane	23.23	23.67
Os04t0644800-01	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.40.150	EntrezGene:4329259	MapMan:5.8.1.2	ProteinID:BAD28096.1	ProteinID:BAF08669.1	ProteinID:BAS78497.1
InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150
GO:GO:0008289	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892
EnsemblPlantsGene:Os02g0448400	EnsemblPlants:Os02t0448400-01	PFAM:PF00168	PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004
PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF152	UniProt:Q6ETC4	SMART:SM00239	InterPro:SMP_LBD
SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI00003CE5F1	RefSeq:XP_015627579.1	SEG:seg

Description

Similar to Synaptotagmin C. (Os02t0448400-01)

Coordinates

chr2:-:14529681..14537401

Molecular Weight (calculated)

61030.2 Da

IEP (calculated)

6.806

GRAVY (calculated)

-0.243

Length

538 amino acids

Sequence
(BLAST)

001: MGFFRTVLGF FGFGVGVTMG LVIGYYLFIY FQPTDVKDPV IRPLVELDTK SLESMLPEVP HWVKNPDFDR IDWLNKFVEN IWPYLDKAIC KTAKEIAKPI
101: IAENTAKYKI DSVEFETLTL GSLPPTFQGM KVYTTDEQEL IMEPSIKWAG NPNITVVVKA FGLKATAQVI DLHVFALPRI TLKPLVPSFP CFAKIVVSLM
201: EKPHVDFGLK LLGADLMAIP GLYVFVQEII KTQVANMYLW PKVLEVPIMD PAKAQKKPVG ILHVNIVRAV KLTKKDFLGK SDPYVKLKLT EEKLPSKKTS
301: VKRSNLNPEW NEDFKLVVKD PESQALELTV YDWEQVGKHD KIGMSVIPLK ELIPDEAKSL TLDLHKTMDA NDPANDKFRG QLTVDVTYKP FKEGDSDVDT
401: SDESGTIEKA PDGTPEGGGL LVVIVHEAQD VEGKHHTNPY VRIVFRGEER KTKHIKKNRD PRWEQEFQFV CEEPPINDKM QIEVISRPPS IGIHSKENLG
501: YVVISLADVI NNKRINEKYH LIDSKNGRIQ LELQWRTS

Best Arabidopsis Sequence Match ( AT1G20080.2 )
(BLAST)

001: MGIISTILGV IGFGFGTTIG IVIGYYLFIY FQSTDVEDPE IKPLVELDSE TIATMFPEIP MWVKNPDFDR IDWLNKLIGH MWPYMDKAIC KMAKSIAKPI
101: IAEQIPNYKI DSVEFEMLTL GSLPPSFQGM KVYATDDKEI IMELSVKWAG NPNIIVVAKA FGLKATVQVI DLQVYATPRI TLKPLVPSFP CFANIFVSLM
201: DKPQVDFGLK LLGADVMAIP GLYRFVQEII KDQVANMYLW PKTLNVQIMD PSKAMKKPVG LLSVKVIKAI KLKKKDLLGG SDPYVKLTLS GDKVPGKKTV
301: VKHSNLNPEW NEEFDLVVKE PESQELQLIV YDWEQVGKHD KIGMNVIQLK DLTPEEPKLM TLELLKSMEP KEPVSEKSRG QLVVEVEYKP FKDDDIPENI
401: DDPNAVEKAP EGTPSTGGLL VVIVHEAEDL EGKYHTNPSV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISSSSRL IHPKETLGYV
501: VINLGDVVSN RRINDKYHLI DSKNGRIQIE LQWRNSS

Arabidopsis Description

SYT2Synaptotagmin-2 [Source:UniProtKB/Swiss-Prot;Acc:B6ETT4]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.