Factsheet for Solyc10g017590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026606	Potato	cytosol, endoplasmic reticulum, mitochondrion, plastid	97.05	95.64
Solyc05g047710.2.1	Tomato	endoplasmic reticulum, mitochondrion	77.68	74.55
Solyc01g094030.2.1	Tomato	plastid	79.16	74.46
VIT_15s0048g01410.t01	Wine grape	endoplasmic reticulum, extracellular	77.68	71.93
Solyc10g052520.1.1	Tomato	endoplasmic reticulum, extracellular	36.84	68.09
GSMUA_Achr2P12230_001	Banana	endoplasmic reticulum, mitochondrion	70.95	67.54
KRH48321	Soybean	endoplasmic reticulum, mitochondrion	73.68	66.79
AT3G61050.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	70.95	66.08
KRH65210	Soybean	endoplasmic reticulum, mitochondrion	74.32	65.98
KRH40562	Soybean	endoplasmic reticulum	74.32	65.98
Bra014457.1-P	Field mustard	endoplasmic reticulum, extracellular	70.11	65.94
CDX89094	Canola	endoplasmic reticulum, extracellular, plasma membrane	65.47	65.61
CDY45675	Canola	endoplasmic reticulum, extracellular	69.68	65.54
Bra003434.1-P	Field mustard	endoplasmic reticulum, extracellular	69.68	65.54
CDY42483	Canola	endoplasmic reticulum, extracellular	65.26	65.4
CDX67848	Canola	endoplasmic reticulum, extracellular, plasma membrane	65.26	65.4
KRH00619	Soybean	mitochondrion, plasma membrane	74.95	65.32
TraesCS2B01G262400.1	Wheat	plasma membrane	67.79	63.39
TraesCS2A01G244800.1	Wheat	plasma membrane	67.79	63.39
TraesCS2D01G242600.1	Wheat	plasma membrane	67.58	63.19
EER96263	Sorghum	mitochondrion, plasma membrane	66.74	62.4
Os07t0409100-01	Rice	plasma membrane	67.16	61.94
GSMUA_Achr5P04070_001	Banana	endoplasmic reticulum, mitochondrion	69.68	61.64
EER93061	Sorghum	endoplasmic reticulum, mitochondrion	64.0	60.32
Zm00001d019472_P005	Maize	endoplasmic reticulum, mitochondrion, plasma membrane	65.26	57.94
EER92549	Sorghum	endoplasmic reticulum, extracellular	62.32	57.93
KRH55269	Soybean	cytosol, plasma membrane	31.58	57.25
Zm00001d028437_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	62.11	56.84
TraesCS4B01G222600.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	60.42	56.39
TraesCS4A01G081200.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	60.84	56.12
TraesCS4D01G223100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	60.84	56.12
Os03t0251600-00	Rice	plasma membrane	62.32	56.06
HORVU4Hr1G062820.2	Barley	endoplasmic reticulum, extracellular, plasma membrane	60.0	55.66
HORVU2Hr1G052430.2	Barley	cytosol	40.21	54.11
AT3G61030.1	Thale cress	mitochondrion	44.84	41.85
AT3G60950.1	Thale cress	mitochondrion	45.26	34.29
Solyc12g009760.1.1	Tomato	extracellular	8.63	33.06
Solyc08g021940.1.1	Tomato	extracellular, plasma membrane	19.58	32.63
Solyc12g009790.1.1	Tomato	endoplasmic reticulum	35.79	30.09
Solyc07g007680.2.1	Tomato	plastid	35.58	30.07
Solyc12g009700.1.1	Tomato	extracellular, plasma membrane	16.63	25.82
Solyc01g111520.2.1	Tomato	nucleus	27.16	23.93
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	26.32	23.81
Solyc09g007860.2.1	Tomato	endoplasmic reticulum	26.95	23.49

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:CLB_plant	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0006139	GO:GO:0006355	GO:GO:0006810	GO:GO:0006869	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	UniProt:K4CYN7	PFAM:PF00168
PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF51
SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562	EnsemblPlantsGene:Solyc10g017590.2	EnsemblPlants:Solyc10g017590.2.1	InterPro:Synaptotagmin_SMP
UniParc:UPI000276C399	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:5571307..5576419

Molecular Weight (calculated)

52708.2 Da

IEP (calculated)

7.072

GRAVY (calculated)

-0.175

Length

475 amino acids

Sequence
(BLAST)

001: MAGWQHMMRY RSRKRVAKAV DVKLMASLNR DDLKKICGDK FPEWISFPVF EQVKWLNKQL SKLWPFVADA GEAIIKDSVE PILEDYRPPG ISSMKFSKLS
101: LGTVAPKIEG IRVQNLKKGQ IIMDIDLRWG GDPNIVIEVD AVVASIPIQL KDLQVFTVIR VIFQLAEEIP CISAVVVALL SEPKPRIDYT LKAVGGSLTA
201: LPGLSDMIED TVNSIVTDML EWPHRIVVPI GGVPVDTSDL ELKPQGKLTV TVMRATNLKN QEMIGKSDPY VVVYIRPLFK FKTKTIDNNL NPVWDETFEL
301: IAEDKETQSL LLEVFDEDIG EDDRMGVTKL SLNELESDTP KEIELRLLPK YDMLKIKDKK DRGTITIKIL YHEFNKKDQL AALEEEKRII EERKKLKAEG
401: VIGSSMEALD GAAALAASGV GAAGSGIGAG LGAGVRVVRS GLSKTKKFMG RTFTGQSTNH KKSDSHSPPS VVNQD

Best Arabidopsis Sequence Match ( AT3G61050.1 )
(BLAST)

001: MGLISGILFG IIFGVALMAG WSRMMTHRSS KRVAKAVDMK LLGSLSRDDL KKICGDNFPQ WISFPAFEQV KWLNKLLSKM WPYIAEAATM VIRDSVEPLL
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ

Arabidopsis Description

NTMC2TYPE4At3g61050 [Source:UniProtKB/TrEMBL;Acc:Q9LEX1]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.