Factsheet for Solyc08g021940.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

plastid 3
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009760.1.1	Tomato	extracellular	23.51	54.03
Solyc12g009700.1.1	Tomato	extracellular, plasma membrane	54.04	50.33
PGSC0003DMT400036226	Potato	endoplasmic reticulum	86.32	44.57
VIT_04s0008g05740.t01	Wine grape	endoplasmic reticulum	71.58	35.79
CDX85729	Canola	endoplasmic reticulum, extracellular, plastid	66.67	34.3
CDY51108	Canola	endoplasmic reticulum, extracellular, plastid	66.67	33.81
Bra023307.1-P	Field mustard	endoplasmic reticulum	66.67	33.81
Solyc12g009790.1.1	Tomato	endoplasmic reticulum	67.02	33.81
Solyc07g007680.2.1	Tomato	plastid	66.32	33.63
KRH52409	Soybean	endoplasmic reticulum, extracellular	67.37	33.45
GSMUA_Achr1P26040_001	Banana	endoplasmic reticulum, golgi	63.86	32.56
GSMUA_Achr7P05380_001	Banana	endoplasmic reticulum	66.32	32.42
Zm00001d002090_P001	Maize	endoplasmic reticulum, extracellular, plastid	62.81	31.08
HORVU2Hr1G114590.1	Barley	endoplasmic reticulum, extracellular, plastid	61.75	30.88
TraesCS2A01G517200.1	Wheat	endoplasmic reticulum, extracellular, plastid	61.75	30.88
TraesCS2D01G518800.1	Wheat	endoplasmic reticulum, extracellular, plastid	61.75	30.88
EES11541	Sorghum	extracellular, golgi	62.11	30.73
TraesCS2B01G545700.3	Wheat	endoplasmic reticulum, extracellular, plastid	61.4	30.7
GSMUA_Achr3P19840_001	Banana	endoplasmic reticulum, golgi, plastid	61.75	29.48
Solyc01g094030.2.1	Tomato	plastid	35.44	20.0
Solyc05g047710.2.1	Tomato	endoplasmic reticulum, mitochondrion	34.04	19.6
Solyc10g017590.2.1	Tomato	mitochondrion	32.63	19.58
Solyc09g007860.2.1	Tomato	endoplasmic reticulum	30.88	16.15
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	27.02	14.67
Solyc01g111520.2.1	Tomato	nucleus	27.72	14.66
Solyc10g052520.1.1	Tomato	endoplasmic reticulum, extracellular	11.23	12.45

Protein Annotations

EnsemblPlants:Solyc08g021940.1.1	EnsemblPlantsGene:Solyc08g021940.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810
GO:GO:0006869	GO:GO:0008150	GO:GO:0008289	GO:GO:0016020	GO:GO:0016021	InterPro:IPR031468
InterPro:SMP_LBD	InterPro:Synaptotagmin_SMP	PANTHER:PTHR10774	PANTHER:PTHR10774:SF166	PFAM:PF17047	PFscan:PS51847
SEG:seg	TMHMM:TMhelix	UniParc:UPI000276BA83	UniProt:K4CJL4	MapMan:35.1	:

Description

No Description!

Coordinates

chr8:+:34140918..34143336

Molecular Weight (calculated)

31692.1 Da

IEP (calculated)

8.207

GRAVY (calculated)

0.349

Length

285 amino acids

Sequence
(BLAST)

001: MGFFLGFFLG AALGIGLIVC FARFQNNRST ARIDLAKSIT AFARMTVQDS RKLLPPEAYP SWVVFSQKQK LSQLNWLNHH LEKMWPYVDE AASELIRTSV
101: EPILEQYRPS ILAALKFSKL TLGTVAPSFT GVSLLDGDPG EIIMELEMQW DGNPNIVLDI KTLVGVALPI QVKNIGFTGV FRLIFKPLVA ELPCFGAVCY
201: SLRHKKNLDF TLKVVGGDIS AIPGVSDAIE GTIRDAIEDS ITWPVRNIVP ILPGDYRCSN FIINIIFIAL HFLPIKTKGF FCLNM

Best Arabidopsis Sequence Match ( AT1G05500.1 )
(BLAST)

001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS

Arabidopsis Description

SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.