Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075422 | Potato | endoplasmic reticulum, extracellular | 97.52 | 94.99 |
| VIT_18s0001g14630.t01 | Wine grape | endoplasmic reticulum, extracellular | 74.67 | 72.73 |
| KRH17448 | Soybean | mitochondrion | 72.57 | 70.82 |
| GSMUA_Achr4P25570_001 | Banana | endoplasmic reticulum, extracellular | 72.57 | 70.82 |
| KRH05967 | Soybean | endoplasmic reticulum, extracellular | 72.0 | 70.26 |
| Solyc01g111520.2.1 | Tomato | nucleus | 72.0 | 70.13 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 70.29 | 68.59 |
| EER99265 | Sorghum | endoplasmic reticulum | 69.9 | 68.09 |
| Zm00001d006238_P001 | Maize | plasma membrane | 69.71 | 67.9 |
| OQU92056 | Sorghum | endoplasmic reticulum | 69.14 | 67.35 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 68.19 | 67.29 |
| Zm00001d030116_P001 | Maize | cytosol | 38.67 | 67.0 |
| AT1G20080.3 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 67.62 | 66.11 |
| Bra012209.1-P | Field mustard | cytosol | 48.19 | 65.54 |
| CDY43415 | Canola | endoplasmic reticulum, extracellular | 66.86 | 65.24 |
| CDY62938 | Canola | endoplasmic reticulum, extracellular | 68.0 | 65.03 |
| TraesCS5D01G336200.1 | Wheat | endoplasmic reticulum | 66.67 | 64.94 |
| CDY54339 | Canola | endoplasmic reticulum, extracellular | 67.81 | 64.85 |
| Bra016478.1-P | Field mustard | endoplasmic reticulum, extracellular | 62.86 | 64.83 |
| TraesCS5A01G330400.1 | Wheat | golgi | 66.1 | 64.38 |
| HORVU5Hr1G084010.1 | Barley | endoplasmic reticulum, extracellular | 65.9 | 64.19 |
| CDY57593 | Canola | endoplasmic reticulum, extracellular | 67.24 | 63.95 |
| TraesCS5B01G330600.1 | Wheat | endoplasmic reticulum | 66.86 | 63.47 |
| GSMUA_Achr1P26490_001 | Banana | cytosol, mitochondrion | 61.71 | 61.02 |
| TraesCS5D01G336100.1 | Wheat | cytosol | 35.05 | 59.55 |
| TraesCS5B01G330500.1 | Wheat | cytosol | 32.95 | 58.84 |
| HORVU5Hr1G084020.3 | Barley | cytosol | 23.62 | 56.88 |
| Zm00001d022625_P006 | Maize | cytosol, peroxisome, plastid | 67.81 | 55.71 |
| Solyc09g007860.2.1 | Tomato | endoplasmic reticulum | 51.62 | 49.72 |
| Solyc12g009760.1.1 | Tomato | extracellular | 6.86 | 29.03 |
| Solyc07g007680.2.1 | Tomato | plastid | 29.33 | 27.4 |
| Solyc12g009790.1.1 | Tomato | endoplasmic reticulum | 29.33 | 27.26 |
| Solyc08g021940.1.1 | Tomato | extracellular, plasma membrane | 14.67 | 27.02 |
| Solyc10g052520.1.1 | Tomato | endoplasmic reticulum, extracellular | 12.95 | 26.46 |
| Solyc10g017590.2.1 | Tomato | mitochondrion | 23.81 | 26.32 |
| Solyc05g047710.2.1 | Tomato | endoplasmic reticulum, mitochondrion | 24.19 | 25.66 |
| Solyc01g094030.2.1 | Tomato | plastid | 24.38 | 25.35 |
| Solyc12g009700.1.1 | Tomato | extracellular, plasma membrane | 13.71 | 23.53 |
Protein Annotations
| Gene3D:2.60.40.150 | MapMan:5.8.1.2 | InterPro:C2_dom | InterPro:C2_domain_sf | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0006810 |
| GO:GO:0006869 | GO:GO:0008150 | GO:GO:0008289 | GO:GO:0009306 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR000008 | InterPro:IPR031468 | InterPro:IPR035892 | UniProt:K4DH04 | PFAM:PF00168 |
| PFAM:PF17047 | PRINTS:PR00360 | PFscan:PS50004 | PFscan:PS51847 | PANTHER:PTHR10774 | PANTHER:PTHR10774:SF50 |
| SMART:SM00239 | InterPro:SMP_LBD | SUPFAM:SSF49562 | EnsemblPlantsGene:Solyc12g089330.1 | EnsemblPlants:Solyc12g089330.1.1 | InterPro:Synaptotagmin_SMP |
| TMHMM:TMhelix | UniParc:UPI000276973D | SEG:seg | : | : | : |
Description
Synaptotagmin-2 [Source:Projected from Arabidopsis thaliana (AT1G20080) UniProtKB/Swiss-Prot;Acc:B6ETT4]
Coordinates
chr12:-:64461124..64465284
Molecular Weight (calculated)
60045.4 Da
IEP (calculated)
6.534
GRAVY (calculated)
-0.250
Length
525 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIVIGLVIG YFIFIYVLPT DVKHPDIRPL AEQDTESLQR LLPEIPLWVK NPDYERLDWF NKMIELMWPY LDKAICKTAK GIVDPIIAEQ IPQYKIESVD
101: FLSFTLGTLP PTFPGMKVYI TEEKELIMEP VIKWAANPNI TLAVKAFGLK ATVQMIDLQI FASPRITLKP LVPTFPCFAK IYISLMEKPH VDFGLKLLGA
201: DAMSIPGLYR FVQEIIKDQV ASMYLWPKTL EVQILDPTKA MKRPVGILNV TVVKAMKLKK TDLLGLSDPY VKLKIVNEKP STKKTTVKHK NLNPEWNEEF
301: SFVVKDPETQ VLKFSVYDWD QVGSHEKMGV NIVPLKDLIP DEPKELTLEL LKNLKPDDVQ NEKARGQLVL EVMYKAFNDE ELANGADESN TVEKAPDGTP
401: DGGGLLVVIV HEGQDLEGKH HTNPSVRMLF RGEEKRTKVV KKNRDPRWEE EFQFVLEEPP VNDRIHVEVV STSKRMGLRH PKETLGYVDV YLADVINNKR
501: INERYHLIDS KNGRLQIELQ WRTAS
101: FLSFTLGTLP PTFPGMKVYI TEEKELIMEP VIKWAANPNI TLAVKAFGLK ATVQMIDLQI FASPRITLKP LVPTFPCFAK IYISLMEKPH VDFGLKLLGA
201: DAMSIPGLYR FVQEIIKDQV ASMYLWPKTL EVQILDPTKA MKRPVGILNV TVVKAMKLKK TDLLGLSDPY VKLKIVNEKP STKKTTVKHK NLNPEWNEEF
301: SFVVKDPETQ VLKFSVYDWD QVGSHEKMGV NIVPLKDLIP DEPKELTLEL LKNLKPDDVQ NEKARGQLVL EVMYKAFNDE ELANGADESN TVEKAPDGTP
401: DGGGLLVVIV HEGQDLEGKH HTNPSVRMLF RGEEKRTKVV KKNRDPRWEE EFQFVLEEPP VNDRIHVEVV STSKRMGLRH PKETLGYVDV YLADVINNKR
501: INERYHLIDS KNGRLQIELQ WRTAS
001: MGFFSTILGF CGFGVGISLG LVIGYVLFVY LLPNDVKDPE IRSIADQDPK AMLRMLPEIP LWVKNPDFDR VDWINRFLEY MWPYLDKAIC KTAKNIAKPI
101: IEEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNILVAIKA FGLKATVQVV DLQVFAQPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDLMGG ADPFVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEFKFSVRD PQTQVLEFSV YDWEQVGNPE KMGMNVLALK EMVPDEHKAF TLELRKTLDG GEDGQPPDKY RGKLEVELLY KPFTEEEMPK
401: GFEETQAVQK APEGTPAAGG MLVVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWNEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTA S
101: IEEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNILVAIKA FGLKATVQVV DLQVFAQPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDLMGG ADPFVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEFKFSVRD PQTQVLEFSV YDWEQVGNPE KMGMNVLALK EMVPDEHKAF TLELRKTLDG GEDGQPPDKY RGKLEVELLY KPFTEEEMPK
401: GFEETQAVQK APEGTPAAGG MLVVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWNEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTA S
Arabidopsis Description
SYTASynaptotagmin A [Source:UniProtKB/TrEMBL;Acc:F4IFM6]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.