Factsheet for Bra012209.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57593	Canola	endoplasmic reticulum, extracellular	98.7	69.02
AT1G20080.3	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	91.71	65.92
Zm00001d030116_P001	Maize	cytosol	50.0	63.7
Bra016478.1-P	Field mustard	endoplasmic reticulum, extracellular	81.09	61.49
TraesCS5D01G336100.1	Wheat	cytosol	46.11	57.61
TraesCS5B01G330500.1	Wheat	cytosol	43.52	57.14
HORVU5Hr1G084020.3	Barley	cytosol	32.12	56.88
VIT_18s0001g14630.t01	Wine grape	endoplasmic reticulum, extracellular	75.13	53.8
KRH05967	Soybean	endoplasmic reticulum, extracellular	72.02	51.67
KRH17448	Soybean	mitochondrion	72.02	51.67
GSMUA_Achr4P25570_001	Banana	endoplasmic reticulum, extracellular	70.47	50.56
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	67.88	48.7
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	67.36	48.24
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	65.54	48.19
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	66.06	47.93
Zm00001d006238_P001	Maize	plasma membrane	65.54	46.94
OQU92056	Sorghum	endoplasmic reticulum	65.54	46.94
EER99265	Sorghum	endoplasmic reticulum	65.28	46.75
HORVU5Hr1G084010.1	Barley	endoplasmic reticulum, extracellular	65.03	46.57
Bra031157.1-P	Field mustard	endoplasmic reticulum, extracellular	65.03	46.4
TraesCS5A01G330400.1	Wheat	golgi	63.99	45.83
TraesCS5D01G336200.1	Wheat	endoplasmic reticulum	63.73	45.64
TraesCS5B01G330600.1	Wheat	endoplasmic reticulum	63.47	44.3
GSMUA_Achr1P26490_001	Banana	cytosol, mitochondrion	59.84	43.5
Zm00001d022625_P006	Maize	cytosol, peroxisome, plastid	63.99	38.65
Bra009476.1-P	Field mustard	endoplasmic reticulum, extracellular	48.45	34.38
Bra015431.1-P	Field mustard	endoplasmic reticulum, extracellular	31.35	21.65
Bra023307.1-P	Field mustard	endoplasmic reticulum	30.83	21.17
Bra030612.1-P	Field mustard	endoplasmic reticulum, extracellular	30.83	18.65
Bra014457.1-P	Field mustard	endoplasmic reticulum, extracellular	22.8	17.43
Bra003434.1-P	Field mustard	endoplasmic reticulum, extracellular	22.54	17.23

Protein Annotations

EnsemblPlants:Bra012209.1	EnsemblPlants:Bra012209.1-P	EnsemblPlantsGene:Bra012209	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf
InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR10774	PANTHER:PTHR10774:SF50	PFAM:PF00168	PFscan:PS50004
PRINTS:PR00360	SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0002541606	UniProt:M4D6U9
MapMan:5.8.1.2	:	:	:	:	:

Description

AT1G20080 (E=7e-168) SYTB, ATSYTB, NTMC2TYPE1.2, NTMC2T1.2 | SYTB

Coordinates

chrA07:-:9298692..9301998

Molecular Weight (calculated)

43762.2 Da

IEP (calculated)

7.321

GRAVY (calculated)

-0.458

Length

386 amino acids

Sequence
(BLAST)

001: MGIISTILGM KVYATDDKEI IMELSVKWAG NPNILVAVKA FGFKATVQPQ VDFGLKLLGA DVMAIPGLYR FVQELIKDQV ANMYLWPKTL TVQIMDPSKA
101: MKKHVGLLNV KVIKAIKLKK KDLLDGSDPY VKLTLSGDKV PGKKTVVKHS NLNPEWNEEF DLVVKEPESQ ELQLIVYDWE QVGKHDKIGM NVIQLKDLTP
201: EEPKLMTLEL LKSMEPNEPV SEKSHGQLVV EVEYKSFKED DIPDNLDDPN AVEKAPEGTP SGGGLLVVIV HEAEDLEGKY HTNPSVRLMF KGEERKTKRV
301: KKNREPRWDE DFQFPLDEPP INDKLHVEVI STTSRIGLNM HPKKKKKNVV INLGDVVSNR RINDKYNLID SKNGRIQIEL QWRTSS

Best Arabidopsis Sequence Match ( AT1G20080.2 )
(BLAST)

001: MGIISTILGV IGFGFGTTIG IVIGYYLFIY FQSTDVEDPE IKPLVELDSE TIATMFPEIP MWVKNPDFDR IDWLNKLIGH MWPYMDKAIC KMAKSIAKPI
101: IAEQIPNYKI DSVEFEMLTL GSLPPSFQGM KVYATDDKEI IMELSVKWAG NPNIIVVAKA FGLKATVQVI DLQVYATPRI TLKPLVPSFP CFANIFVSLM
201: DKPQVDFGLK LLGADVMAIP GLYRFVQEII KDQVANMYLW PKTLNVQIMD PSKAMKKPVG LLSVKVIKAI KLKKKDLLGG SDPYVKLTLS GDKVPGKKTV
301: VKHSNLNPEW NEEFDLVVKE PESQELQLIV YDWEQVGKHD KIGMNVIQLK DLTPEEPKLM TLELLKSMEP KEPVSEKSRG QLVVEVEYKP FKDDDIPENI
401: DDPNAVEKAP EGTPSTGGLL VVIVHEAEDL EGKYHTNPSV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISSSSRL IHPKETLGYV
501: VINLGDVVSN RRINDKYHLI DSKNGRIQIE LQWRNSS

Arabidopsis Description

SYT2Synaptotagmin-2 [Source:UniProtKB/Swiss-Prot;Acc:B6ETT4]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.