Factsheet for TraesCS5B01G330600.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
endoplasmic reticulum 7
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G336200.1	Wheat	endoplasmic reticulum	96.75	99.26
HORVU5Hr1G084010.1	Barley	endoplasmic reticulum, extracellular	94.58	97.03
TraesCS5A01G330400.1	Wheat	golgi	94.39	96.85
EER99265	Sorghum	endoplasmic reticulum	86.44	88.68
Zm00001d006238_P001	Maize	plasma membrane	85.35	87.57
Os09t0538800-01	Rice	plasma membrane	85.35	87.57
OQU92056	Sorghum	endoplasmic reticulum	84.63	86.83
Zm00001d030116_P001	Maize	cytosol	46.84	85.48
TraesCS5B01G330500.1	Wheat	cytosol	44.12	82.99
Os01t0819200-00	Rice	endoplasmic reticulum, extracellular	41.41	75.08
VIT_18s0001g14630.t01	Wine grape	endoplasmic reticulum, extracellular	71.97	73.84
Zm00001d022625_P006	Maize	cytosol, peroxisome, plastid	84.63	73.24
PGSC0003DMT400015793	Potato	endoplasmic reticulum	70.52	72.36
Solyc01g111520.2.1	Tomato	nucleus	69.98	71.8
KRH29282	Soybean	endoplasmic reticulum	69.98	71.8
VIT_03s0038g02330.t01	Wine grape	endoplasmic reticulum	69.8	71.61
KRH24304	Soybean	endoplasmic reticulum	69.26	71.06
KRH51399	Soybean	endoplasmic reticulum, extracellular, plasma membrane	68.54	70.71
KRH05967	Soybean	endoplasmic reticulum, extracellular	68.17	70.07
KRH17448	Soybean	mitochondrion	67.81	69.7
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	66.0	67.72
CDY13846	Canola	endoplasmic reticulum, extracellular	65.64	67.1
CDX81995	Canola	endoplasmic reticulum, extracellular	65.64	67.1
Bra031157.1-P	Field mustard	endoplasmic reticulum, extracellular	65.64	67.1
AT1G20080.3	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	65.1	67.04
CDY43415	Canola	endoplasmic reticulum, extracellular	65.1	66.91
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	63.47	66.86
Bra016478.1-P	Field mustard	endoplasmic reticulum, extracellular	60.94	66.21
CDY62938	Canola	endoplasmic reticulum, extracellular	65.46	65.94
CDY54339	Canola	endoplasmic reticulum, extracellular	65.28	65.76
CDY57593	Canola	endoplasmic reticulum, extracellular	64.56	64.67
Bra012209.1-P	Field mustard	cytosol	44.3	63.47
AT2G20990.3	Thale cress	endoplasmic reticulum, extracellular	66.0	63.04
AT2G21010.1	Thale cress	cytosol	26.94	58.2
TraesCS7B01G347000.3	Wheat	extracellular, golgi	50.09	48.01
TraesCS2B01G545700.3	Wheat	endoplasmic reticulum, extracellular, plastid	28.21	27.37
TraesCS2B01G262400.1	Wheat	plasma membrane	24.05	26.18
TraesCS4B01G222600.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	24.05	26.13
AT2G21040.1	Thale cress	cytosol	12.3	26.05

Protein Annotations

Gene3D:2.60.40.150	MapMan:5.8.1.2	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0008289	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	PFAM:PF00168	PFAM:PF17047
PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF50	SMART:SM00239
InterPro:SMP_LBD	SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5B01G330600	EnsemblPlants:TraesCS5B01G330600.1
TIGR:cd00030	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:514928386..514932721

Molecular Weight (calculated)

62883.3 Da

IEP (calculated)

6.352

GRAVY (calculated)

-0.305

Length

553 amino acids

Sequence
(BLAST)

001: MGVVSTVLGL FGFGFGFSSG IVIGYYFFIY FQPTDVKDVE VRPLVEYDSN SLDGILPEIP MWVKNPDYDR VDWLNRFLEL MWPNLNKAIC RMAQDIAKPI
101: IAENCEKYKI DSVEFETLTL GSLPPTFQGM KVYITDEKEL IMEPSLKWAA NPNITVVAKA YGLKATVQIV DLQVFASPRI TLKPLVPTFP CFANISVSLM
201: EKPHVDFGLK LFGADLMAIP VLYKFVQDTI KKQVGNMYLW PKTLEVPIMD PSKASKRPVG ILLVKVVRAQ NLKKKDLLGK SDPYAKLKMT DDKLPSKKTS
301: VKRSNLNPEW NEDFKFVVTD PENQSLEVDV FDWEQVGKHE KMGMNMVLLK ELPPEETKVL TLNLLKTMDP NDIQNEKSRG QIILEATYKP FKEEDMEKEN
401: VDGADEVQKA PDNTPAGGGL LFVVVHEAQD LEGKHHTNPY AKIIFKGEEK KTKVIKKNRD PRWEDEFEFV CEEPPTNDKL HVEVLSKAGK KGILHGKVRY
501: STRNAWPLIG LEALGYIDIS LADVISNKRI NEKFHLIDSK NGQIQIELQW RTS

Best Arabidopsis Sequence Match ( AT1G20080.2 )
(BLAST)

001: MGIISTILGV IGFGFGTTIG IVIGYYLFIY FQSTDVEDPE IKPLVELDSE TIATMFPEIP MWVKNPDFDR IDWLNKLIGH MWPYMDKAIC KMAKSIAKPI
101: IAEQIPNYKI DSVEFEMLTL GSLPPSFQGM KVYATDDKEI IMELSVKWAG NPNIIVVAKA FGLKATVQVI DLQVYATPRI TLKPLVPSFP CFANIFVSLM
201: DKPQVDFGLK LLGADVMAIP GLYRFVQEII KDQVANMYLW PKTLNVQIMD PSKAMKKPVG LLSVKVIKAI KLKKKDLLGG SDPYVKLTLS GDKVPGKKTV
301: VKHSNLNPEW NEEFDLVVKE PESQELQLIV YDWEQVGKHD KIGMNVIQLK DLTPEEPKLM TLELLKSMEP KEPVSEKSRG QLVVEVEYKP FKDDDIPENI
401: DDPNAVEKAP EGTPSTGGLL VVIVHEAEDL EGKYHTNPSV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISSSSRL IHPKETLGYV
501: VINLGDVVSN RRINDKYHLI DSKNGRIQIE LQWRNSS

Arabidopsis Description

SYT2Synaptotagmin-2 [Source:UniProtKB/Swiss-Prot;Acc:B6ETT4]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.