Factsheet for Bra016478.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62938	Canola	endoplasmic reticulum, extracellular	99.41	92.17
AT1G20080.3	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	89.19	84.54
Bra012209.1-P	Field mustard	cytosol	61.49	81.09
VIT_18s0001g14630.t01	Wine grape	endoplasmic reticulum, extracellular	76.23	71.99
KRH17448	Soybean	mitochondrion	73.48	69.52
KRH05967	Soybean	endoplasmic reticulum, extracellular	73.08	69.14
GSMUA_Achr4P25570_001	Banana	endoplasmic reticulum, extracellular	71.91	68.03
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	69.35	65.61
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	67.58	64.66
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	68.17	64.38
EER99265	Sorghum	endoplasmic reticulum	67.19	63.45
HORVU5Hr1G084010.1	Barley	endoplasmic reticulum, extracellular	67.19	63.45
Zm00001d006238_P001	Maize	plasma membrane	67.19	63.45
OQU92056	Sorghum	endoplasmic reticulum	66.99	63.27
Bra031157.1-P	Field mustard	endoplasmic reticulum, extracellular	67.19	63.22
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	64.83	62.86
TraesCS5A01G330400.1	Wheat	golgi	66.4	62.71
TraesCS5D01G336200.1	Wheat	endoplasmic reticulum	66.21	62.52
TraesCS5B01G330600.1	Wheat	endoplasmic reticulum	66.21	60.94
HORVU5Hr1G084020.3	Barley	cytosol	24.95	58.26
Zm00001d030116_P001	Maize	cytosol	34.18	57.43
GSMUA_Achr1P26490_001	Banana	cytosol, mitochondrion	59.33	56.87
Zm00001d022625_P006	Maize	cytosol, peroxisome, plastid	65.42	52.11
TraesCS5D01G336100.1	Wheat	cytosol	31.63	52.1
TraesCS5B01G330500.1	Wheat	cytosol	29.08	50.34
Bra009476.1-P	Field mustard	endoplasmic reticulum, extracellular	48.92	45.77
Bra015431.1-P	Field mustard	endoplasmic reticulum, extracellular	30.65	27.91
Bra023307.1-P	Field mustard	endoplasmic reticulum	29.27	26.51
Bra030612.1-P	Field mustard	endoplasmic reticulum, extracellular	30.06	23.98
Bra003434.1-P	Field mustard	endoplasmic reticulum, extracellular	23.38	23.56
Bra014457.1-P	Field mustard	endoplasmic reticulum, extracellular	22.99	23.17

Protein Annotations

Gene3D:2.60.40.150	MapMan:5.8.1.2	EnsemblPlantsGene:Bra016478	EnsemblPlants:Bra016478.1	EnsemblPlants:Bra016478.1-P	InterPro:C2_dom
InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0006869
GO:GO:0008150	GO:GO:0008289	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468
InterPro:IPR035892	UniProt:M4DJ01	PFAM:PF00168	PFAM:PF17047	PFscan:PS50004	PFscan:PS51847
PANTHER:PTHR10774	PANTHER:PTHR10774:SF50	SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP
TMHMM:TMhelix	UniParc:UPI0002546B74	SEG:seg	:	:	:

Description

AT1G20080 (E=4e-128) SYTB, ATSYTB, NTMC2TYPE1.2, NTMC2T1.2 | SYTB

Coordinates

chrA08:-:18652126..18654822

Molecular Weight (calculated)

57546.9 Da

IEP (calculated)

4.895

GRAVY (calculated)

-0.164

Length

509 amino acids

Sequence
(BLAST)

001: MGIISTILGT IGFGFGTTIG ILIGYYLFIY HQSTDVQASS NLLLNSLDPE IKPLMELDSE AIAKMFPEIP LWVKNPDFDR IDWLNKLIGY MWPYLDKAIS
101: NMAKSIAKPI IAEQIPNYKI DSVEFEMLTL GSLPPTFQGM KVYATDDKEL IMELSVKWAG NPNILVAAKA FGLKVTVQVV DLQVYATPRI TLKPLVPSFP
201: CFANIFVSLM DKPQVDFGLK LLGADVMAIP GLYGFVQELI KDQVANMYLW PKTLCVQIMD PSTVPGKKTV VKHSNLNPEW NEEFDLVVKD PENQVLHLIV
301: YDWEQVGKHD KIGMNVIPLK DLTPEEPKLI TLELLKSMEP NEPVSEKSRG QLVVEVEYKP FKEDNIPDNL DDPNAVEKAP EGTPSGGGLL VVIVHEAEDL
401: EGKYHTNPYV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISTSSRM GLIQSKEALG YVVINLADVV SNRRINDKYH LIDSKNGRVQ
501: IELQWRTSS

Best Arabidopsis Sequence Match ( AT1G20080.2 )
(BLAST)

001: MGIISTILGV IGFGFGTTIG IVIGYYLFIY FQSTDVEDPE IKPLVELDSE TIATMFPEIP MWVKNPDFDR IDWLNKLIGH MWPYMDKAIC KMAKSIAKPI
101: IAEQIPNYKI DSVEFEMLTL GSLPPSFQGM KVYATDDKEI IMELSVKWAG NPNIIVVAKA FGLKATVQVI DLQVYATPRI TLKPLVPSFP CFANIFVSLM
201: DKPQVDFGLK LLGADVMAIP GLYRFVQEII KDQVANMYLW PKTLNVQIMD PSKAMKKPVG LLSVKVIKAI KLKKKDLLGG SDPYVKLTLS GDKVPGKKTV
301: VKHSNLNPEW NEEFDLVVKE PESQELQLIV YDWEQVGKHD KIGMNVIQLK DLTPEEPKLM TLELLKSMEP KEPVSEKSRG QLVVEVEYKP FKDDDIPENI
401: DDPNAVEKAP EGTPSTGGLL VVIVHEAEDL EGKYHTNPSV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISSSSRL IHPKETLGYV
501: VINLGDVVSN RRINDKYHLI DSKNGRIQIE LQWRNSS

Arabidopsis Description

SYT2Synaptotagmin-2 [Source:UniProtKB/Swiss-Prot;Acc:B6ETT4]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.