Factsheet for GSMUA_AchrUn_randomP12480_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P25570_001	Banana	endoplasmic reticulum, extracellular	79.32	78.44
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	76.88	76.02
GSMUA_Achr1P26490_001	Banana	cytosol, mitochondrion	75.75	75.89
VIT_18s0001g14630.t01	Wine grape	endoplasmic reticulum, extracellular	75.38	74.4
PGSC0003DMT400015793	Potato	endoplasmic reticulum	75.19	74.21
Solyc01g111520.2.1	Tomato	nucleus	75.19	74.21
VIT_03s0038g02330.t01	Wine grape	endoplasmic reticulum	73.12	72.17
KRH24304	Soybean	endoplasmic reticulum	72.56	71.61
KRH29282	Soybean	endoplasmic reticulum	72.56	71.61
KRH17448	Soybean	mitochondrion	70.86	70.07
KRH05967	Soybean	endoplasmic reticulum, extracellular	70.68	69.89
KRH51399	Soybean	endoplasmic reticulum, extracellular, plasma membrane	69.92	69.4
CDX81995	Canola	endoplasmic reticulum, extracellular	70.3	69.13
AT1G20080.3	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	69.74	69.09
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	69.92	69.02
CDY43415	Canola	endoplasmic reticulum, extracellular	69.74	68.96
CDY13846	Canola	endoplasmic reticulum, extracellular	69.92	68.76
Bra031157.1-P	Field mustard	endoplasmic reticulum, extracellular	69.92	68.76
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	67.29	68.19
Bra016478.1-P	Field mustard	endoplasmic reticulum, extracellular	64.66	67.58
CDY62938	Canola	endoplasmic reticulum, extracellular	69.17	67.03
CDY54339	Canola	endoplasmic reticulum, extracellular	68.98	66.85
CDY57593	Canola	endoplasmic reticulum, extracellular	69.36	66.85
Bra012209.1-P	Field mustard	cytosol	47.93	66.06
AT2G20990.3	Thale cress	endoplasmic reticulum, extracellular	69.74	64.08
AT2G21010.1	Thale cress	cytosol	28.95	60.16
GSMUA_Achr4P18210_001	Banana	extracellular, plasma membrane	15.41	57.75
GSMUA_Achr4P18220_001	Banana	cytosol, endoplasmic reticulum, golgi, mitochondrion	46.43	52.44
GSMUA_Achr7P05380_001	Banana	endoplasmic reticulum	30.08	27.44
AT2G21040.1	Thale cress	cytosol	13.35	27.2
GSMUA_Achr1P26040_001	Banana	endoplasmic reticulum, golgi	28.38	27.01
GSMUA_Achr2P12230_001	Banana	endoplasmic reticulum, mitochondrion	25.19	26.85
GSMUA_Achr3P19840_001	Banana	endoplasmic reticulum, golgi, plastid	29.89	26.63
GSMUA_Achr5P04070_001	Banana	endoplasmic reticulum, mitochondrion	24.44	24.21

Protein Annotations

Gene3D:2.60.40.150	MapMan:5.8.1.2	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0008289	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:GSMUA_AchrUn_randomG12480_001	EnsemblPlants:GSMUA_AchrUn_randomP12480_001	EnsemblPlants:GSMUA_AchrUn_randomT12480_001	InterPro:IPR000008	InterPro:IPR031468
InterPro:IPR035892	UniProt:M0U8K7	PFAM:PF00168	PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004
PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF50	SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562
InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI0002951A69	SEG:seg	:	:

Description

Putative Extended synaptotagmin-1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG12480_001]

Coordinates

chrchrUn_random:-:59284357..59294261

Molecular Weight (calculated)

60535.8 Da

IEP (calculated)

8.888

GRAVY (calculated)

-0.319

Length

532 amino acids

Sequence
(BLAST)

001: MGFVSTALGL CGFGVGLSAG IVIGYFLFIY FQPSDVKDPK IRPLVEHDSK SLEQMLPEIP LWVKNPDYDR IDWLNKFLEM MWPYLNKAIC RTAKQIADPI
101: IADNTVKYKL DSVEFETFTL GSLPPTFQGM KVYITEEKEL IMEPSLKWAG NPNVVVVVKA YGLKLTAQVV DLQIFATPRI TLKPLVPSFP CFAKILVSLM
201: DKPHVDFGLK LLGADLMAIP GLYRFVQETI KNQVANMYLW PKTLEVPVLD VSKASRKPVG ILHLKVIRAY KLKKKDLLGK SDPYVKLKLG DDKLPSKKTR
301: VKHSNLNPEW NEEFKFVIRD PENQFVELNV GKHEKMGMNV IRLNELAPDE PKTLTLDLLK NLESRDVQSD KSRGQIVVEA LYKPFKEKEV PKDVGENADE
401: VEKAPDGTPS GGGLLVVIVH EAKDLEGKHH TNPYVRVTFR GEEKKTKHIK KNRDPRWEEE FQFVCEEPPI NDKMHVEVLS RAPSIGIHPK ESLGYVTISL
501: TDVVNNKRTN ETYHLIDSKN GRIQIELQWR TS

Best Arabidopsis Sequence Match ( AT2G20990.1 )
(BLAST)

001: MGFFSTILGF CGFGVGISLG LVIGYVLFVY LLPNDVKDPE IRSIADQDPK AMLRMLPEIP LWVKNPDFDR VDWINRFLEY MWPYLDKAIC KTAKNIAKPI
101: IEEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNILVAIKA FGLKATVQVV DLQVFAQPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDLMGG ADPFVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEFKFSVRD PQTQVLEFSV YDWEQVGNPE KMGMNVLALK EMVPDEHKAF TLELRKTLDG GEDGQPPDKY RGKLEVELLY KPFTEEEMPK
401: GFEETQAVQK APEGTPAAGG MLVVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWNEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTA S

Arabidopsis Description

SYTASynaptotagmin A [Source:UniProtKB/TrEMBL;Acc:F4IFM6]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.