Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH15981 | Soybean | extracellular | 56.34 | 52.98 |
| KRG95324 | Soybean | extracellular, plasma membrane | 38.73 | 45.45 |
| VIT_13s0019g04450.t01 | Wine grape | endoplasmic reticulum, extracellular | 65.49 | 17.1 |
| VIT_08s0040g01740.t01 | Wine grape | endoplasmic reticulum, extracellular | 61.97 | 16.09 |
| KRG91923 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 61.27 | 15.96 |
| Solyc09g007860.2.1 | Tomato | endoplasmic reticulum | 60.56 | 15.78 |
| PGSC0003DMT400055528 | Potato | mitochondrion | 60.56 | 15.78 |
| KRH34856 | Soybean | extracellular | 60.56 | 15.78 |
| GSMUA_Achr4P25570_001 | Banana | endoplasmic reticulum, extracellular | 59.15 | 15.61 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 57.75 | 15.41 |
| Bra009476.1-P | Field mustard | endoplasmic reticulum, extracellular | 58.45 | 15.26 |
| AT5G04220.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 56.34 | 14.81 |
| CDX70250 | Canola | endoplasmic reticulum, extracellular | 57.04 | 14.81 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 54.93 | 14.5 |
| CDY41389 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 54.93 | 14.34 |
| GSMUA_Achr1P26490_001 | Banana | cytosol, mitochondrion | 42.96 | 11.49 |
| GSMUA_Achr2P12230_001 | Banana | endoplasmic reticulum, mitochondrion | 31.69 | 9.02 |
| GSMUA_Achr5P04070_001 | Banana | endoplasmic reticulum, mitochondrion | 30.28 | 8.01 |
| GSMUA_Achr1P26040_001 | Banana | endoplasmic reticulum, golgi | 28.17 | 7.16 |
| GSMUA_Achr7P05380_001 | Banana | endoplasmic reticulum | 26.06 | 6.35 |
| GSMUA_Achr3P19840_001 | Banana | endoplasmic reticulum, golgi, plastid | 23.24 | 5.53 |
| GSMUA_Achr4P18220_001 | Banana | cytosol, endoplasmic reticulum, golgi, mitochondrion | 9.86 | 2.97 |
| VIT_10s0003g03240.t01 | Wine grape | mitochondrion | 0.7 | 0.83 |
| VIT_12s0055g01250.t01 | Wine grape | cytosol, mitochondrion | 0.7 | 0.83 |
| VIT_09s0018g01580.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| VIT_18s0001g14590.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P18210_001 | EnsemblPlants:GSMUA_Achr4T18210_001 | EnsemblPlantsGene:GSMUA_Achr4G18210_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0006869 | GO:GO:0008150 | GO:GO:0008289 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR031468 | InterPro:SMP_LBD | PANTHER:PTHR10774 | PANTHER:PTHR10774:SF62 | PFscan:PS51847 | TMHMM:TMhelix |
| UniParc:UPI0002955D58 | UniProt:M0SPY4 | MapMan:35.1 | : | : | : |
Description
NTMC2Type1.2 protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G18210_001]
Coordinates
chr4:+:18879804..18884964
Molecular Weight (calculated)
16390.1 Da
IEP (calculated)
5.614
GRAVY (calculated)
0.173
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLVDTLLGV VGFGLGIAIG LVVGYFFYVY FQPSDVKDPI VRPLHELDSN ALQKLLPEIP FWLKNPDYDR VDWLNKFILN MWPYLDKAIC NRIQSETKPI
101: FDQYIGKYWI KSIEFHNLTL GSLPPTIHGL YLSLELISDR TL
101: FDQYIGKYWI KSIEFHNLTL GSLPPTIHGL YLSLELISDR TL
001: MGIISTILGV IGFGFGTTIG IVIGYYLFIY FQSTDVEDPE IKPLVELDSE TIATMFPEIP MWVKNPDFDR IDWLNKLIGH MWPYMDKAIC KMAKSIAKPI
101: IAEQIPNYKI DSVEFEMLTL GSLPPSFQGM KVYATDDKEI IMELSVKWAG NPNIIVVAKA FGLKATVQVI DLQVYATPRI TLKPLVPSFP CFANIFVSLM
201: DKPQVDFGLK LLGADVMAIP GLYRFVQEII KDQVANMYLW PKTLNVQIMD PSKAMKKPVG LLSVKVIKAI KLKKKDLLGG SDPYVKLTLS GDKVPGKKTV
301: VKHSNLNPEW NEEFDLVVKE PESQELQLIV YDWEQVGKHD KIGMNVIQLK DLTPEEPKLM TLELLKSMEP KEPVSEKSRG QLVVEVEYKP FKDDDIPENI
401: DDPNAVEKAP EGTPSTGGLL VVIVHEAEDL EGKYHTNPSV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISSSSRL IHPKETLGYV
501: VINLGDVVSN RRINDKYHLI DSKNGRIQIE LQWRNSS
101: IAEQIPNYKI DSVEFEMLTL GSLPPSFQGM KVYATDDKEI IMELSVKWAG NPNIIVVAKA FGLKATVQVI DLQVYATPRI TLKPLVPSFP CFANIFVSLM
201: DKPQVDFGLK LLGADVMAIP GLYRFVQEII KDQVANMYLW PKTLNVQIMD PSKAMKKPVG LLSVKVIKAI KLKKKDLLGG SDPYVKLTLS GDKVPGKKTV
301: VKHSNLNPEW NEEFDLVVKE PESQELQLIV YDWEQVGKHD KIGMNVIQLK DLTPEEPKLM TLELLKSMEP KEPVSEKSRG QLVVEVEYKP FKDDDIPENI
401: DDPNAVEKAP EGTPSTGGLL VVIVHEAEDL EGKYHTNPSV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISSSSRL IHPKETLGYV
501: VINLGDVVSN RRINDKYHLI DSKNGRIQIE LQWRNSS
Arabidopsis Description
SYT2Synaptotagmin-2 [Source:UniProtKB/Swiss-Prot;Acc:B6ETT4]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.