Factsheet for GSMUA_Achr4P18220_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi, cytosol

Predictor Summary:

plastid 1
mitochondrion 2
endoplasmic reticulum 2
cytosol 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, golgi, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g14590.t01	Wine grape	cytosol	14.86	76.09
VIT_09s0018g01580.t01	Wine grape	cytosol	14.44	73.91
VIT_10s0003g03240.t01	Wine grape	mitochondrion	17.2	66.94
VIT_12s0055g01250.t01	Wine grape	cytosol, mitochondrion	16.99	66.12
EER88839	Sorghum	endoplasmic reticulum, extracellular	62.63	55.04
TraesCS7D01G437000.1	Wheat	extracellular, vacuole	62.0	54.17
HORVU7Hr1G101310.22	Barley	extracellular, golgi	61.78	53.99
Os06t0685300-00	Rice	endoplasmic reticulum, extracellular	61.78	53.89
TraesCS7A01G447300.1	Wheat	extracellular, vacuole	61.57	53.8
VIT_13s0019g04450.t01	Wine grape	endoplasmic reticulum, extracellular	60.72	52.57
TraesCS7B01G347000.3	Wheat	extracellular, golgi	62.21	50.78
VIT_08s0040g01740.t01	Wine grape	endoplasmic reticulum, extracellular	58.6	50.46
KRH34856	Soybean	extracellular	56.26	48.62
KRG91923	Soybean	endoplasmic reticulum, extracellular, plasma membrane	56.05	48.44
PGSC0003DMT400055528	Potato	mitochondrion	55.84	48.26
AT5G04220.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	55.2	48.15
Solyc09g007860.2.1	Tomato	endoplasmic reticulum	54.99	47.52
GSMUA_Achr4P25570_001	Banana	endoplasmic reticulum, extracellular	54.14	47.4
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	53.93	47.21
Bra009476.1-P	Field mustard	endoplasmic reticulum, extracellular	54.35	47.06
CDY41389	Canola	endoplasmic reticulum, extracellular, plasma membrane	54.35	47.06
CDX70250	Canola	endoplasmic reticulum, extracellular	54.14	46.62
Zm00001d014499_P004	Maize	endoplasmic reticulum, extracellular	49.04	46.48
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	52.44	46.43
GSMUA_Achr1P26490_001	Banana	cytosol, mitochondrion	51.38	45.57
GSMUA_Achr7P05380_001	Banana	endoplasmic reticulum	29.09	23.5
GSMUA_Achr1P26040_001	Banana	endoplasmic reticulum, golgi	27.18	22.9
GSMUA_Achr2P12230_001	Banana	endoplasmic reticulum, mitochondrion	24.2	22.85
GSMUA_Achr3P19840_001	Banana	endoplasmic reticulum, golgi, plastid	26.75	21.11
GSMUA_Achr5P04070_001	Banana	endoplasmic reticulum, mitochondrion	23.14	20.3
GSMUA_Achr4P18210_001	Banana	extracellular, plasma membrane	2.97	9.86
KRH15981	Soybean	extracellular	2.76	8.61
KRG95324	Soybean	extracellular, plasma membrane	1.7	6.61

Protein Annotations

Gene3D:2.60.40.150	MapMan:5.8.1.2	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0008289	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr4G18220_001	EnsemblPlants:GSMUA_Achr4P18220_001	EnsemblPlants:GSMUA_Achr4T18220_001	InterPro:IPR000008	InterPro:IPR031468
InterPro:IPR035892	UniProt:M0SPY5	PFAM:PF00168	PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004
PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF62	SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562
InterPro:Synaptotagmin_SMP	UniParc:UPI0002964328	SEG:seg	:	:	:

Description

Putative Extended synaptotagmin-2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G18220_001]

Coordinates

chr4:+:18885485..18894232

Molecular Weight (calculated)

54177.9 Da

IEP (calculated)

8.874

GRAVY (calculated)

-0.217

Length

471 amino acids

Sequence
(BLAST)

001: MHDTRNFRFY HRHPSRFMSL TFYVENVYIL VEILELNAYI LSFHLFCNKS WIYVLLLLGV KVYETQEKEL VFEPAVRWAG NTNIVLVLKL SSIKVTVQLL
101: DLQISLVPRV TLKPLVPSFP CFANLTVSLM EKPYVDFGLK ILGGDLMALP GLYRFVQDTI ATEVSNLYHW PKLIEVPILD SSSCATKKPV GILHVNVVRA
201: SNLLKMDLLG KSDPYVKLSL SGERLPSKKT SIKMRNLNPE WNEQFKLTVK DPETQVLQLH VYDWEKVKMH DKLGMQVIPL SLLTPHETKE FTLDLLKNLN
301: PNDPQNTRNR GKIIVQLTFD PFKEDNGSFN MGLDEKLSGS DRATQDTSYN GGLLLVTVEA AEDVEGKRHT NPYAMILFRG EKKKTKVIKK SRDPRWKEDF
401: QFMLEDAPID EKIHVEVLSK GRLFSFHPKE SLGYVDINLS DVVNNGRINE RYHLINSHNG VIHLEIKWNT T

Best Arabidopsis Sequence Match ( AT5G04220.3 )
(BLAST)

001: MKNPDYERVD WFNKFISYMW PYLDKAVCGI IRSSVQPLFA DYIGTFCIES IEFENLSLGT LPPTVHGVKF YETNEKELLF EPSIKWAGNP NIVLVLKVLS
101: LRIRVQLVDL QFFAIVRVAL KPLLPTFPCF GMVVVSLMEK PHVDFGLKVL GGDLMSIPGL YRYVQETIKR QVSSMYHWPQ VLEIPILDSS TASVKKPVGL
201: LHVSILRARN LLKKDLLGTS DPYVKLSLTG EKLPAKKTTI KKRNLNPEWN EHFKLIVKDP NSQVLQLEVF DWDKVGGHDR LGMQMIPLQK INPGERKEFN
301: LDLIKNSNVV MDSGDKKKRG RLEVDLRYVP FREESIKRRK ESREEKSSED DDFLSQAGLL SVAVQSAKDV EGKKKHSNPY AVVLFRGEKK KTKMLKKTRD
401: PRWNEEFQFT LEEPPVKESI RVEVMSKGTG FHFRSKEELG HVDINLDDVV DNGRINQKYH LINSRNGIIH IEIRWTTS

Arabidopsis Description

SYT3Synaptotagmin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA06]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.