Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P04070_001 | Banana | endoplasmic reticulum, mitochondrion | 85.17 | 79.14 |
| VIT_15s0048g01410.t01 | Wine grape | endoplasmic reticulum, extracellular | 77.96 | 75.83 |
| EER96263 | Sorghum | mitochondrion, plasma membrane | 75.75 | 74.41 |
| TraesCS2B01G262400.1 | Wheat | plasma membrane | 75.35 | 74.02 |
| Os07t0409100-01 | Rice | plasma membrane | 76.35 | 73.98 |
| KRH48321 | Soybean | endoplasmic reticulum, mitochondrion | 77.56 | 73.86 |
| TraesCS2D01G242600.1 | Wheat | plasma membrane | 75.15 | 73.82 |
| TraesCS2A01G244800.1 | Wheat | plasma membrane | 75.15 | 73.82 |
| EER93061 | Sorghum | endoplasmic reticulum, mitochondrion | 73.95 | 73.21 |
| KRH65210 | Soybean | endoplasmic reticulum, mitochondrion | 77.56 | 72.34 |
| Solyc01g094030.2.1 | Tomato | plastid | 72.55 | 71.68 |
| Solyc10g017590.2.1 | Tomato | mitochondrion | 67.54 | 70.95 |
| CDY42483 | Canola | endoplasmic reticulum, extracellular | 66.73 | 70.25 |
| Bra014457.1-P | Field mustard | endoplasmic reticulum, extracellular | 70.94 | 70.1 |
| KRH40562 | Soybean | endoplasmic reticulum | 75.15 | 70.09 |
| CDX89094 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 66.53 | 70.04 |
| AT3G61050.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 71.34 | 69.8 |
| PGSC0003DMT400035570 | Potato | cytosol | 52.3 | 69.79 |
| PGSC0003DMT400026606 | Potato | cytosol, endoplasmic reticulum, mitochondrion, plastid | 67.13 | 69.5 |
| Solyc05g047710.2.1 | Tomato | endoplasmic reticulum, mitochondrion | 68.74 | 69.29 |
| CDX67848 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 65.53 | 68.99 |
| Bra003434.1-P | Field mustard | endoplasmic reticulum, extracellular | 69.74 | 68.91 |
| KRH00619 | Soybean | mitochondrion, plasma membrane | 75.15 | 68.81 |
| CDY45675 | Canola | endoplasmic reticulum, extracellular | 69.54 | 68.71 |
| Zm00001d019472_P005 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane | 73.35 | 68.41 |
| EER92549 | Sorghum | endoplasmic reticulum, extracellular | 68.34 | 66.73 |
| Zm00001d028437_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 68.94 | 66.28 |
| Solyc10g052520.1.1 | Tomato | endoplasmic reticulum, extracellular | 33.87 | 65.76 |
| TraesCS4B01G222600.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 66.53 | 65.23 |
| HORVU4Hr1G062820.2 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 66.53 | 64.84 |
| TraesCS4D01G223100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 66.33 | 64.27 |
| HORVU2Hr1G052430.2 | Barley | cytosol | 45.29 | 64.02 |
| TraesCS4A01G081200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 65.53 | 63.5 |
| Os03t0251600-00 | Rice | plasma membrane | 65.73 | 62.12 |
| KRH55269 | Soybean | cytosol, plasma membrane | 32.06 | 61.07 |
| AT3G61030.1 | Thale cress | mitochondrion | 42.08 | 41.26 |
| AT3G60950.1 | Thale cress | mitochondrion | 42.28 | 33.65 |
| GSMUA_Achr4P18210_001 | Banana | extracellular, plasma membrane | 9.02 | 31.69 |
| GSMUA_Achr7P05380_001 | Banana | endoplasmic reticulum | 35.07 | 30.02 |
| GSMUA_Achr1P26040_001 | Banana | endoplasmic reticulum, golgi | 33.07 | 29.52 |
| GSMUA_Achr3P19840_001 | Banana | endoplasmic reticulum, golgi, plastid | 34.67 | 28.98 |
| GSMUA_Achr4P25570_001 | Banana | endoplasmic reticulum, extracellular | 28.26 | 26.21 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 27.86 | 25.84 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 26.85 | 25.19 |
| GSMUA_Achr4P18220_001 | Banana | cytosol, endoplasmic reticulum, golgi, mitochondrion | 22.85 | 24.2 |
| GSMUA_Achr1P26490_001 | Banana | cytosol, mitochondrion | 25.65 | 24.11 |
Protein Annotations
| Gene3D:2.60.40.150 | MapMan:35.1 | InterPro:C2_dom | InterPro:C2_domain_sf | InterPro:CLB_plant | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006810 |
| GO:GO:0006869 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr2G12230_001 | EnsemblPlants:GSMUA_Achr2P12230_001 | EnsemblPlants:GSMUA_Achr2T12230_001 |
| InterPro:IPR000008 | InterPro:IPR031468 | InterPro:IPR035892 | UniProt:M0S7B4 | PFAM:PF00168 | PFAM:PF17047 |
| PFscan:PS50004 | PFscan:PS51847 | PANTHER:PTHR10774 | PANTHER:PTHR10774:SF51 | SMART:SM00239 | InterPro:SMP_LBD |
| SUPFAM:SSF49562 | InterPro:Synaptotagmin_SMP | TMHMM:TMhelix | UniParc:UPI000296CE4E | SEG:seg | : |
Description
lipid binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G12230_001]
Coordinates
chr2:-:14720330..14730515
Molecular Weight (calculated)
53998.3 Da
IEP (calculated)
7.408
GRAVY (calculated)
0.072
Length
499 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLISGLVMG ALVGIALMAG WSRMMRRRST KRILKAADIK LLGSLSRDDL KKLCGDNYPE WVSFPLYEQV KWLNKMLAKL WPFIADAATM VIKDTVEPLL
101: DDYRPPGISS LKFSKLSLGN VPPKIEGIRV QSLKKGQIIM DIDFRWGGDL SIILAVEALV ASLPIQLKDL QVFTVIRVIF QLSEEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVN SIVSDMLEWP HRIVVPLGGV DVNTSELELK PQGKLTVTVV KANNLKNLEL VGKSDPYVVL YVRPMFKVKT
301: KVVDDNLNPV WNETVELIAE DKETQSIIFE VYDEDKIQQD KKMGIAKLSL NELEPEISKE IELSLLASLD TLKVKDKKDR GSLTIKVLYH PFTEEEQQAA
401: LEAEKRILEE RRKMKEAGLI GSTMDALGGA ASLVGSGVGL VVGSGLGAGV GLVGSGLGAV GGGLSKAGKF MGKSVTSQFS SSKKNGSSSP VVPGDGNAS
101: DDYRPPGISS LKFSKLSLGN VPPKIEGIRV QSLKKGQIIM DIDFRWGGDL SIILAVEALV ASLPIQLKDL QVFTVIRVIF QLSEEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVN SIVSDMLEWP HRIVVPLGGV DVNTSELELK PQGKLTVTVV KANNLKNLEL VGKSDPYVVL YVRPMFKVKT
301: KVVDDNLNPV WNETVELIAE DKETQSIIFE VYDEDKIQQD KKMGIAKLSL NELEPEISKE IELSLLASLD TLKVKDKKDR GSLTIKVLYH PFTEEEQQAA
401: LEAEKRILEE RRKMKEAGLI GSTMDALGGA ASLVGSGVGL VVGSGLGAGV GLVGSGLGAV GGGLSKAGKF MGKSVTSQFS SSKKNGSSSP VVPGDGNAS
001: MGLISGILFG IIFGVALMAG WSRMMTHRSS KRVAKAVDMK LLGSLSRDDL KKICGDNFPQ WISFPAFEQV KWLNKLLSKM WPYIAEAATM VIRDSVEPLL
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ
Arabidopsis Description
NTMC2TYPE4At3g61050 [Source:UniProtKB/TrEMBL;Acc:Q9LEX1]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.