Factsheet for TraesCS4D01G223100.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G081200.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	97.86	97.86
TraesCS4B01G222600.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	95.53	96.66
HORVU4Hr1G062820.2	Barley	endoplasmic reticulum, extracellular, plasma membrane	90.49	91.02
EER92549	Sorghum	endoplasmic reticulum, extracellular	80.19	80.82
Zm00001d028437_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	80.78	80.15
Os03t0251600-00	Rice	plasma membrane	77.67	75.76
GSMUA_Achr2P12230_001	Banana	endoplasmic reticulum, mitochondrion	64.27	66.33
KRH48321	Soybean	endoplasmic reticulum, mitochondrion	65.83	64.69
Bra014457.1-P	Field mustard	endoplasmic reticulum, extracellular	62.72	63.96
VIT_15s0048g01410.t01	Wine grape	endoplasmic reticulum, extracellular	63.69	63.94
CDY42483	Canola	endoplasmic reticulum, extracellular	58.84	63.92
TraesCS2D01G242600.1	Wheat	plasma membrane	62.91	63.78
Bra003434.1-P	Field mustard	endoplasmic reticulum, extracellular	62.52	63.76
CDX89094	Canola	endoplasmic reticulum, extracellular, plasma membrane	58.64	63.71
CDY45675	Canola	endoplasmic reticulum, extracellular	62.33	63.56
CDX67848	Canola	endoplasmic reticulum, extracellular, plasma membrane	58.45	63.5
AT3G61050.2	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	62.72	63.33
KRH65210	Soybean	endoplasmic reticulum, mitochondrion	65.24	62.8
KRH40562	Soybean	endoplasmic reticulum	65.05	62.62
KRH00619	Soybean	mitochondrion, plasma membrane	65.24	61.65
Solyc05g047710.2.1	Tomato	endoplasmic reticulum, mitochondrion	59.22	61.62
Solyc01g094030.2.1	Tomato	plastid	60.19	61.39
Solyc10g017590.2.1	Tomato	mitochondrion	56.12	60.84
PGSC0003DMT400026606	Potato	cytosol, endoplasmic reticulum, mitochondrion, plastid	56.5	60.37
GSMUA_Achr5P04070_001	Banana	endoplasmic reticulum, mitochondrion	62.91	60.34
PGSC0003DMT400035570	Potato	cytosol	43.11	59.36
Solyc10g052520.1.1	Tomato	endoplasmic reticulum, extracellular	27.57	55.25
KRH55269	Soybean	cytosol, plasma membrane	26.02	51.15
AT3G61030.1	Thale cress	mitochondrion	37.67	38.11
TraesCS6D01G083600.2	Wheat	endoplasmic reticulum, extracellular	35.15	32.21
AT3G60950.1	Thale cress	mitochondrion	37.86	31.1
TraesCS2D01G518800.1	Wheat	endoplasmic reticulum, extracellular, plastid	32.43	29.3
TraesCS7D01G437000.1	Wheat	extracellular, vacuole	25.63	24.49
TraesCS5D01G336200.1	Wheat	endoplasmic reticulum	25.44	24.3
TraesCS5D01G336100.1	Wheat	cytosol	12.43	20.71

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0008289	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	PFAM:PF00168
PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF166
SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4D01G223100
EnsemblPlants:TraesCS4D01G223100.1	TIGR:cd00030	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:+:380156154..380159305

Molecular Weight (calculated)

56240.4 Da

IEP (calculated)

6.738

GRAVY (calculated)

0.031

Length

515 amino acids

Sequence
(BLAST)

001: MGFFSGIMMG FILGVALIAG WASAMARRAH KRSAKAADVN VLGSLSREDL KKICGENLPQ WISFPEYDQV KWLNRQLSKL WPFVEEAATM VIRDSVEPIL
101: DVYRPVGISS LKFSKLSLGT VPPKIEGIRV QSFQKGQITM DIDFKWGGDP NIVLAVETLV ASLPIQFKNL QVFTIIRVVF QLSDEIPCIS AVVIALLAEP
201: KPRIDYILKA VGGSLTAMPG LSDMIDDTVA SLITDMLQWP HRIVVPLGVD VDISDLELKP HGKVTVTVVR GESLKNKEFI GKSDPYVVLF IRPMFKERTR
301: VIDDNLNPEW NETFELIAED KETQHIILEV FDEDSLKQDK RLGIVKLPLS DLEVETVQEI NLQLLSSLDT TKVKDKKDRG VLTVRVLYHL YTKEEALRAL
401: ELEKRTVEER LKTREATGPA VSGAADAARG VAAPSTVTTN VAGTGVAAGA AVAGSVVHKD GLGVHKDGPG VHMVGTGIDA VGKSITKAGK FVGRTVTGPF
501: SSQRRSAASV PTVDE

Best Arabidopsis Sequence Match ( AT1G05500.1 )
(BLAST)

001: MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV
101: LEQYRPAIVA SLTFSKLTLG TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL IFRPLVEDFP CFGAVSVSLR
201: EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR
301: SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP
401: FVTSSMTSLE RVLKNDTTDE ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL NPVWNQTFDF VVEDGLHDML
501: VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES KTGKLQLHLK WMAQSIYRDS

Arabidopsis Description

SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.