Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH65210 | Soybean | endoplasmic reticulum, mitochondrion | 98.28 | 96.26 |
| VIT_15s0048g01410.t01 | Wine grape | endoplasmic reticulum, extracellular | 83.4 | 85.19 |
| KRH40562 | Soybean | endoplasmic reticulum | 84.92 | 83.18 |
| KRH00619 | Soybean | mitochondrion, plasma membrane | 85.31 | 82.02 |
| PGSC0003DMT400035570 | Potato | cytosol | 56.68 | 79.41 |
| Solyc01g094030.2.1 | Tomato | plastid | 75.95 | 78.81 |
| CDY42483 | Canola | endoplasmic reticulum, extracellular | 70.42 | 77.85 |
| CDX89094 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 70.23 | 77.64 |
| GSMUA_Achr2P12230_001 | Banana | endoplasmic reticulum, mitochondrion | 73.86 | 77.56 |
| Bra014457.1-P | Field mustard | endoplasmic reticulum, extracellular | 74.62 | 77.43 |
| CDX67848 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 69.85 | 77.22 |
| CDY45675 | Canola | endoplasmic reticulum, extracellular | 74.05 | 76.83 |
| Bra003434.1-P | Field mustard | endoplasmic reticulum, extracellular | 74.05 | 76.83 |
| KRH55269 | Soybean | cytosol, plasma membrane | 38.36 | 76.72 |
| AT3G61050.2 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 74.62 | 76.67 |
| Solyc05g047710.2.1 | Tomato | endoplasmic reticulum, mitochondrion | 72.14 | 76.36 |
| Solyc10g017590.2.1 | Tomato | mitochondrion | 66.79 | 73.68 |
| TraesCS2A01G244800.1 | Wheat | plasma membrane | 71.37 | 73.62 |
| TraesCS2B01G262400.1 | Wheat | plasma membrane | 71.18 | 73.43 |
| PGSC0003DMT400026606 | Potato | cytosol, endoplasmic reticulum, mitochondrion, plastid | 67.37 | 73.24 |
| TraesCS2D01G242600.1 | Wheat | plasma membrane | 70.99 | 73.23 |
| EER96263 | Sorghum | mitochondrion, plasma membrane | 69.47 | 71.65 |
| Os07t0409100-01 | Rice | plasma membrane | 70.42 | 71.65 |
| EER93061 | Sorghum | endoplasmic reticulum, mitochondrion | 67.37 | 70.04 |
| GSMUA_Achr5P04070_001 | Banana | endoplasmic reticulum, mitochondrion | 70.8 | 69.09 |
| EER92549 | Sorghum | endoplasmic reticulum, extracellular | 66.03 | 67.71 |
| Solyc10g052520.1.1 | Tomato | endoplasmic reticulum, extracellular | 33.02 | 67.32 |
| Zm00001d019472_P005 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane | 68.7 | 67.29 |
| Zm00001d028437_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 66.41 | 67.05 |
| TraesCS4B01G222600.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 64.89 | 66.8 |
| TraesCS4D01G223100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 64.69 | 65.83 |
| TraesCS4A01G081200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 64.5 | 65.63 |
| HORVU4Hr1G062820.2 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 63.74 | 65.23 |
| HORVU2Hr1G052430.2 | Barley | cytosol | 43.13 | 64.02 |
| Os03t0251600-00 | Rice | plasma membrane | 62.79 | 62.31 |
| AT3G61030.1 | Thale cress | mitochondrion | 44.08 | 45.38 |
| AT3G60950.1 | Thale cress | mitochondrion | 46.18 | 38.6 |
| KRH52409 | Soybean | endoplasmic reticulum, extracellular | 34.54 | 31.53 |
| KRH03623 | Soybean | endoplasmic reticulum | 34.73 | 30.64 |
| KRH15981 | Soybean | extracellular | 8.02 | 27.81 |
| KRG91923 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 27.48 | 26.42 |
| KRH05967 | Soybean | endoplasmic reticulum, extracellular | 26.53 | 25.84 |
| KRH17448 | Soybean | mitochondrion | 26.34 | 25.65 |
| KRH51399 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 25.76 | 25.19 |
| KRH34856 | Soybean | extracellular | 26.14 | 25.14 |
| KRH24304 | Soybean | endoplasmic reticulum | 25.38 | 24.68 |
| KRH29282 | Soybean | endoplasmic reticulum | 25.19 | 24.49 |
| KRG95324 | Soybean | extracellular, plasma membrane | 5.15 | 22.31 |
Protein Annotations
| EntrezGene:100777838 | Gene3D:2.60.40.150 | MapMan:35.1 | EMBL:ACUP02004224 | InterPro:C2_dom | InterPro:C2_domain_sf |
| InterPro:CLB_plant | ncoils:Coil | EnsemblPlantsGene:GLYMA_07G082700 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0006810 | GO:GO:0006869 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | UniProt:I1KIL7 | InterPro:IPR000008 |
| InterPro:IPR031468 | InterPro:IPR035892 | EnsemblPlants:KRH48321 | ProteinID:KRH48321 | ProteinID:KRH48321.1 | PFAM:PF00168 |
| PFAM:PF17047 | PRINTS:PR00360 | PFscan:PS50004 | PFscan:PS51847 | PANTHER:PTHR10774 | PANTHER:PTHR10774:SF51 |
| SMART:SM00239 | InterPro:SMP_LBD | SUPFAM:SSF49562 | InterPro:Synaptotagmin_SMP | TMHMM:TMhelix | UniParc:UPI0002338368 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:-:7591978..7603313
Molecular Weight (calculated)
56247.5 Da
IEP (calculated)
9.293
GRAVY (calculated)
0.149
Length
524 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLFSGIFMG VLFGIALMAG WARMMKYRSA KRIAKAADIK LLGSLNRDDL KKICGDNLPE WISFPVYEQV KWLNKKLTKL WPFVAEAATM VIRESVEPLL
101: EEYRPPGITS LKFSKLSLGN VAPKIEGIRV QSLTKGQIIM DIDFRWGGDP SIILAVEAAL VASIPIQLKD LQVFTIVRVI FQLAEEIPCI SAVVVALLAE
201: PKPRIDYTLK AVGGSLTAIP GISDMIDDTV NSIVTDMLQW PHRIVVPLGG IPVDTSELEL KPQGKLALTV VKATALKNME MIGKSDPYVV VHIRPLFKYK
301: TKVIDNNLNP TWNEKFELIA EDKETQSLIL EVLDKDIGQD KRLGIAQLPL IDLEIQTEKE IELRLLPSLD TLKVKDKKDR GTLTVKVMYY QFNKEEQLVA
401: LEAEKKILEE RKKLKEAGMI GSTMDALDGA VSVVGSGVGL VGTGVVAGAG LVGSGIGAGA GLVGSGIGAG VGIVGSGLGA VGSGLSKAGK FMGRTITGHS
501: GSRKSGSSTP VNNALENGGG AKPL
101: EEYRPPGITS LKFSKLSLGN VAPKIEGIRV QSLTKGQIIM DIDFRWGGDP SIILAVEAAL VASIPIQLKD LQVFTIVRVI FQLAEEIPCI SAVVVALLAE
201: PKPRIDYTLK AVGGSLTAIP GISDMIDDTV NSIVTDMLQW PHRIVVPLGG IPVDTSELEL KPQGKLALTV VKATALKNME MIGKSDPYVV VHIRPLFKYK
301: TKVIDNNLNP TWNEKFELIA EDKETQSLIL EVLDKDIGQD KRLGIAQLPL IDLEIQTEKE IELRLLPSLD TLKVKDKKDR GTLTVKVMYY QFNKEEQLVA
401: LEAEKKILEE RKKLKEAGMI GSTMDALDGA VSVVGSGVGL VGTGVVAGAG LVGSGIGAGA GLVGSGIGAG VGIVGSGLGA VGSGLSKAGK FMGRTITGHS
501: GSRKSGSSTP VNNALENGGG AKPL
001: MGLISGILFG IIFGVALMAG WSRMMTHRSS KRVAKAVDMK LLGSLSRDDL KKICGDNFPQ WISFPAFEQV KWLNKLLSKM WPYIAEAATM VIRDSVEPLL
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ
101: EDYRPPGITS LKFSKLTLGN VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF QLADEIPCIS AVVVALLAEP
201: KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT
301: KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL
401: EDEKKIMEER KRLKEAGVIG STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM GRTITGQSSK RSGSSTPVNT
501: VPENDGAKQQ
Arabidopsis Description
NTMC2TYPE4At3g61050 [Source:UniProtKB/TrEMBL;Acc:Q9LEX1]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.