CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 4
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05967	Soybean	endoplasmic reticulum, extracellular	97.4	97.4
VIT_18s0001g14630.t01	Wine grape	endoplasmic reticulum, extracellular	83.83	83.67
KRH29282	Soybean	endoplasmic reticulum	78.62	78.48
KRH24304	Soybean	endoplasmic reticulum	78.62	78.48
KRH51399	Soybean	endoplasmic reticulum, extracellular, plasma membrane	75.28	75.56
AT1G20080.3	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	74.91	75.05
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	74.54	74.54
GSMUA_Achr4P25570_001	Banana	endoplasmic reticulum, extracellular	73.98	73.98
CDY43415	Canola	endoplasmic reticulum, extracellular	73.61	73.61
Bra016478.1-P	Field mustard	endoplasmic reticulum, extracellular	69.52	73.48
CDY54339	Canola	endoplasmic reticulum, extracellular	74.91	73.41
CDY62938	Canola	endoplasmic reticulum, extracellular	74.54	73.04
PGSC0003DMT400075422	Potato	endoplasmic reticulum, extracellular	72.86	72.73
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	70.82	72.57
Bra012209.1-P	Field mustard	cytosol	51.67	72.02
CDY57593	Canola	endoplasmic reticulum, extracellular	73.79	71.92
EER99265	Sorghum	endoplasmic reticulum	71.93	71.8
Zm00001d006238_P001	Maize	plasma membrane	71.38	71.24
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	70.07	70.86
OQU92056	Sorghum	endoplasmic reticulum	70.82	70.69
HORVU5Hr1G084010.1	Barley	endoplasmic reticulum, extracellular	70.26	70.13
Zm00001d030116_P001	Maize	cytosol	39.22	69.64
TraesCS5A01G330400.1	Wheat	golgi	69.52	69.39
TraesCS5D01G336200.1	Wheat	endoplasmic reticulum	69.52	69.39
TraesCS5B01G330600.1	Wheat	endoplasmic reticulum	69.7	67.81
GSMUA_Achr1P26490_001	Banana	cytosol, mitochondrion	62.27	63.09
TraesCS5D01G336100.1	Wheat	cytosol	35.13	61.16
HORVU5Hr1G084020.3	Barley	cytosol	24.54	60.55
TraesCS5B01G330500.1	Wheat	cytosol	32.9	60.2
Zm00001d022625_P006	Maize	cytosol, peroxisome, plastid	69.89	58.84
KRH34856	Soybean	extracellular	57.43	56.7
KRG91923	Soybean	endoplasmic reticulum, extracellular, plasma membrane	55.95	55.23
KRH15981	Soybean	extracellular	13.38	47.68
KRG95324	Soybean	extracellular, plasma membrane	9.48	42.15
KRH52409	Soybean	endoplasmic reticulum, extracellular	29.93	28.05
KRH03623	Soybean	endoplasmic reticulum	30.3	27.44
KRH48321	Soybean	endoplasmic reticulum, mitochondrion	25.65	26.34
KRH65210	Soybean	endoplasmic reticulum, mitochondrion	25.46	25.61
KRH40562	Soybean	endoplasmic reticulum	24.35	24.49
KRH00619	Soybean	mitochondrion, plasma membrane	24.54	24.22
KRH55269	Soybean	cytosol, plasma membrane	11.15	22.9

Protein Annotations

EntrezGene:100778906	Gene3D:2.60.40.150	MapMan:5.8.1.2	EMBL:ACUP02009091	InterPro:C2_dom	InterPro:C2_domain_sf
EnsemblPlantsGene:GLYMA_14G220000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0006869
GO:GO:0008150	GO:GO:0008289	GO:GO:0016020	GO:GO:0016021	UniProt:I1MC28	InterPro:IPR000008
InterPro:IPR031468	InterPro:IPR035892	EnsemblPlants:KRH17448	ProteinID:KRH17448	ProteinID:KRH17448.1	PFAM:PF00168
PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF50
SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562	InterPro:Synaptotagmin_SMP	TMHMM:TMhelix	UniParc:UPI000233B9C5

Description

hypothetical protein

Coordinates

chr14:-:48504434..48511153

Molecular Weight (calculated)

61197.6 Da

IEP (calculated)

6.812

GRAVY (calculated)

-0.271

Length

538 amino acids

Sequence
(BLAST)

001: MGILSTIASF FGFGMGTSIG LVIGYYLFIY FQSTDVKDPV IQPLIEQDAK TLQLLLPEIP TWIKNPDYDR LDWLNKFIEY MWPYLDKAIC KTAKSIAKPI
101: IAEQIPKYKI DSVEFEELNL GSLPPTFQGM KVYVTDEKEL IMEPSVKWAG NPNIIVAVKA FGLRATVQVV DLQVFAAPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LLGADAMSIP GLYRIVQEII KDQVAKMYLW PKALEVQIMD PTKAMKVPVG ILHVKVVRAE KLKKKDLLGA SDPYVKLKLT EEKLPSKKTT
301: VKYKNLNPEW NEEFNIVVKD PESQVLELTV YDWEQIGKHD KMGMNVIPLK EITPDEPKAV TLNLLKTMDP NDPENAKSRG QLTVEVLYKP FKEDELPQSA
401: EDSNAIEKAP EGTPASGGLL VIIVHEAEDV EGKHHTNPYV RLLFKGEERK TKHVKKNRDP RWGESFQFML EEPPTNERLY VEVQSASSKL GLLHPKESLG
501: YVDIKLSDVV TNKRINEKYH LIDSRNGRIQ IELQWRTP

Best Arabidopsis Sequence Match ( AT1G20080.2 )
(BLAST)

001: MGIISTILGV IGFGFGTTIG IVIGYYLFIY FQSTDVEDPE IKPLVELDSE TIATMFPEIP MWVKNPDFDR IDWLNKLIGH MWPYMDKAIC KMAKSIAKPI
101: IAEQIPNYKI DSVEFEMLTL GSLPPSFQGM KVYATDDKEI IMELSVKWAG NPNIIVVAKA FGLKATVQVI DLQVYATPRI TLKPLVPSFP CFANIFVSLM
201: DKPQVDFGLK LLGADVMAIP GLYRFVQEII KDQVANMYLW PKTLNVQIMD PSKAMKKPVG LLSVKVIKAI KLKKKDLLGG SDPYVKLTLS GDKVPGKKTV
301: VKHSNLNPEW NEEFDLVVKE PESQELQLIV YDWEQVGKHD KIGMNVIQLK DLTPEEPKLM TLELLKSMEP KEPVSEKSRG QLVVEVEYKP FKDDDIPENI
401: DDPNAVEKAP EGTPSTGGLL VVIVHEAEDL EGKYHTNPSV RLLFRGEERK TKRVKKNREP RWDEDFQFPL DEPPINDKLH VEVISSSSRL IHPKETLGYV
501: VINLGDVVSN RRINDKYHLI DSKNGRIQIE LQWRNSS

Arabidopsis Description

SYT2Synaptotagmin-2 [Source:UniProtKB/Swiss-Prot;Acc:B6ETT4]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.