Factsheet for Solyc01g111520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015793	Potato	endoplasmic reticulum	97.96	97.96
VIT_03s0038g02330.t01	Wine grape	endoplasmic reticulum	78.66	78.66
KRH29282	Soybean	endoplasmic reticulum	78.48	78.48
KRH24304	Soybean	endoplasmic reticulum	77.74	77.74
GSMUA_Achr4P25570_001	Banana	endoplasmic reticulum, extracellular	75.7	75.84
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	74.21	75.19
KRH51399	Soybean	endoplasmic reticulum, extracellular, plasma membrane	74.58	75.0
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	74.77	74.91
CDX81995	Canola	endoplasmic reticulum, extracellular	74.21	73.94
EER99265	Sorghum	endoplasmic reticulum	73.84	73.84
Bra031157.1-P	Field mustard	endoplasmic reticulum, extracellular	73.65	73.38
CDY13846	Canola	endoplasmic reticulum, extracellular	73.65	73.38
OQU92056	Sorghum	endoplasmic reticulum	73.1	73.1
Zm00001d006238_P001	Maize	plasma membrane	73.1	73.1
HORVU5Hr1G084010.1	Barley	endoplasmic reticulum, extracellular	72.54	72.54
Solyc12g089330.1.1	Tomato	endoplasmic reticulum, extracellular	70.13	72.0
TraesCS5A01G330400.1	Wheat	golgi	71.8	71.8
TraesCS5D01G336200.1	Wheat	endoplasmic reticulum	71.43	71.43
TraesCS5B01G330600.1	Wheat	endoplasmic reticulum	71.8	69.98
AT2G20990.3	Thale cress	endoplasmic reticulum, extracellular	73.47	68.39
Zm00001d030116_P001	Maize	cytosol	38.03	67.66
GSMUA_Achr1P26490_001	Banana	cytosol, mitochondrion	64.56	65.54
AT2G21010.1	Thale cress	cytosol	30.98	65.23
HORVU5Hr1G084020.3	Barley	cytosol	25.05	61.93
TraesCS5D01G336100.1	Wheat	cytosol	34.88	60.84
TraesCS5B01G330500.1	Wheat	cytosol	33.02	60.54
Zm00001d022625_P006	Maize	cytosol, peroxisome, plastid	71.24	60.09
Solyc09g007860.2.1	Tomato	endoplasmic reticulum	54.17	53.58
Os01t0819300-01	Rice	cytosol, mitochondrion, plastid	10.2	47.83
Solyc12g009760.1.1	Tomato	extracellular	6.86	29.84
AT2G21040.1	Thale cress	cytosol	13.73	28.35
Solyc07g007680.2.1	Tomato	plastid	29.5	28.29
Solyc12g009790.1.1	Tomato	endoplasmic reticulum	29.5	28.14
Solyc08g021940.1.1	Tomato	extracellular, plasma membrane	14.66	27.72
Solyc10g017590.2.1	Tomato	mitochondrion	23.93	27.16
Solyc10g052520.1.1	Tomato	endoplasmic reticulum, extracellular	12.62	26.46
Solyc05g047710.2.1	Tomato	endoplasmic reticulum, mitochondrion	23.93	26.06
Solyc01g094030.2.1	Tomato	plastid	24.3	25.94
Solyc12g009700.1.1	Tomato	extracellular, plasma membrane	12.8	22.55

Protein Annotations

Gene3D:2.60.40.150	MapMan:5.8.1.2	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0006810	GO:GO:0006869	GO:GO:0008150	GO:GO:0008289	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000008	InterPro:IPR031468	InterPro:IPR035892	UniProt:K4B414	PFAM:PF00168
PFAM:PF17047	PRINTS:PR00360	PFscan:PS50004	PFscan:PS51847	PANTHER:PTHR10774	PANTHER:PTHR10774:SF50
SMART:SM00239	InterPro:SMP_LBD	SUPFAM:SSF49562	EnsemblPlantsGene:Solyc01g111520.2	EnsemblPlants:Solyc01g111520.2.1	InterPro:Synaptotagmin_SMP
TMHMM:TMhelix	UniParc:UPI0002767707	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:97743574..97752077

Molecular Weight (calculated)

61376.7 Da

IEP (calculated)

6.908

GRAVY (calculated)

-0.298

Length

539 amino acids

Sequence
(BLAST)

001: MGFVSTILGF CGFGVGVSCG LTIGYYLFIY FQPCDVKDPV IRPLVERDSK SLQQLLSEIP LWVKCPDYDR VDWLNKFIEY MWPYLDKAIC RTAKDIAAPI
101: IAEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYVTEEKEL IMEPSIKWAG NPNVTVAVKA FGLKATVQVV DLQVFAAPRI TLKPLVPSFP CFANIFVSLM
201: EKPHVDFGLK LLGADLMSIP GLYRFVQETI KDQVANMYLW PKSLEVQILD PSKAMKKPVG VLHVKILRAM NLKKKDLLGA SDPYVKLKLT ESKLPSKKTP
301: VRHKNLNPEW NEEFNMVVKD PESQALELSV YDWEKIGKHD KMGMNVIPLK DLTPDETKTM TLSLLKNMDA NDSQNDKDRG QIMVELTYKP FKEDELPKDF
401: EDNDAAHKVP EGTPPGGGVL MIIVHEAQDV EGKHHTNPYV KILFKGEERK TKQVKKNRDP RWEEEFTFVL EEPPVNDRVH MEVVSTSTRI GLLHPKETLG
501: YVDINLSDVV SNKRINEKYH LIDSKNGRLQ VELQWRTAS

Best Arabidopsis Sequence Match ( AT2G20990.1 )
(BLAST)

001: MGFFSTILGF CGFGVGISLG LVIGYVLFVY LLPNDVKDPE IRSIADQDPK AMLRMLPEIP LWVKNPDFDR VDWINRFLEY MWPYLDKAIC KTAKNIAKPI
101: IEEQIPKYKI DSVEFETLTL GSLPPTFQGM KVYLTDEKEL IMEPCLKWAA NPNILVAIKA FGLKATVQVV DLQVFAQPRI TLKPLVPSFP CFANIYVSLM
201: EKPHVDFGLK LGGADLMSIP GLYRFVQEQI KDQVANMYLW PKTLVVPILD PAKAFRRPVG IVHVKVVRAV GLRKKDLMGG ADPFVKIKLS EDKIPSKKTT
301: VKHKNLNPEW NEEFKFSVRD PQTQVLEFSV YDWEQVGNPE KMGMNVLALK EMVPDEHKAF TLELRKTLDG GEDGQPPDKY RGKLEVELLY KPFTEEEMPK
401: GFEETQAVQK APEGTPAAGG MLVVIVHSAE DVEGKHHTNP YVRIYFKGEE RKTKHVKKNR DPRWNEEFTF MLEEPPVREK LHVEVLSTSS RIGLLHPKET
501: LGYVDIPVVD VVNNKRMNQK FHLIDSKNGK IQIELEWRTA S

Arabidopsis Description

SYTASynaptotagmin A [Source:UniProtKB/TrEMBL;Acc:F4IFM6]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.