Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G083600.2 | Wheat | endoplasmic reticulum, extracellular | 99.47 | 99.47 |
| HORVU6Hr1G017900.14 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 97.86 | 94.02 |
| KXG36798 | Sorghum | cytosol | 80.43 | 90.22 |
| Zm00001d007034_P008 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 88.61 | 84.84 |
| TraesCS2A01G517200.1 | Wheat | endoplasmic reticulum, extracellular, plastid | 65.12 | 64.21 |
| TraesCS2A01G244800.1 | Wheat | plasma membrane | 32.38 | 35.83 |
| TraesCS4A01G081200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 32.03 | 34.95 |
| TraesCS5A01G330400.1 | Wheat | golgi | 28.47 | 29.68 |
| TraesCS7A01G447300.1 | Wheat | extracellular, vacuole | 28.47 | 29.68 |
Protein Annotations
| Gene3D:2.60.40.150 | MapMan:35.1 | InterPro:C2_dom | InterPro:C2_domain_sf | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0008289 | InterPro:IPR000008 | InterPro:IPR031468 | InterPro:IPR035892 | PFAM:PF00168 | PFAM:PF17047 |
| PRINTS:PR00360 | PFscan:PS50004 | PFscan:PS51847 | PANTHER:PTHR10774 | PANTHER:PTHR10774:SF166 | SMART:SM00239 |
| InterPro:SMP_LBD | SUPFAM:SSF49562 | SignalP:SignalP-TM | InterPro:Synaptotagmin_SMP | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6A01G098900 |
| EnsemblPlants:TraesCS6A01G098900.2 | TIGR:cd00030 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6A:-:65856073..65866066
Molecular Weight (calculated)
63047.2 Da
IEP (calculated)
5.322
GRAVY (calculated)
-0.090
Length
562 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFLFGALLG LVLGVGVVMA FARIENSRAE QRRQLAATVS SFSKLSVQDL KTLIPTEAYP SWVSFNQKQK LKWLNQELVK IWPFVNEAAS ELIKSSVEPV
101: FEQYKSFILA SIHFSKLTLG TVAPQFTGVQ ILDSDSAGIT MELDMQWDGN PNIVLDIQTT LGISLPVQVK NIGFTGTLRL LFKPLVAELP CFGAVCVSLR
201: EKSKVDFTLK VVGGEMTAIP GISDAIEGTI RDTIEDTLTW PNRIIVPIVP GDYSDLELKP VGLLEVKLVE ARDLKNKDLV GKSDPFAVLY IRPLSAKTKK
301: SKTINNDLNP IWNEHYEFVV EDSSTQHLTV KIYDDEGLQP SEIIGCARVD LSDVTPGKVK DVWLELVKDL EIQRDKKPRG QVHLELLYYP FEKQEGVSNP
401: FAGQIQLTSL EKVLKTESNG YDVNQRKNVI TRGVLSVTVI SAEDIPAMDV MGKADPFVVL YLKKGETKKK TRVVTETLNP IWNQTFDFVV EDALHDLLIV
501: EVWDHDTFGK DYIGRCILTL TRAILEGEFQ DTYVLQGAKS GKLNLHFKWT AQPIYRDRDR DQ
101: FEQYKSFILA SIHFSKLTLG TVAPQFTGVQ ILDSDSAGIT MELDMQWDGN PNIVLDIQTT LGISLPVQVK NIGFTGTLRL LFKPLVAELP CFGAVCVSLR
201: EKSKVDFTLK VVGGEMTAIP GISDAIEGTI RDTIEDTLTW PNRIIVPIVP GDYSDLELKP VGLLEVKLVE ARDLKNKDLV GKSDPFAVLY IRPLSAKTKK
301: SKTINNDLNP IWNEHYEFVV EDSSTQHLTV KIYDDEGLQP SEIIGCARVD LSDVTPGKVK DVWLELVKDL EIQRDKKPRG QVHLELLYYP FEKQEGVSNP
401: FAGQIQLTSL EKVLKTESNG YDVNQRKNVI TRGVLSVTVI SAEDIPAMDV MGKADPFVVL YLKKGETKKK TRVVTETLNP IWNQTFDFVV EDALHDLLIV
501: EVWDHDTFGK DYIGRCILTL TRAILEGEFQ DTYVLQGAKS GKLNLHFKWT AQPIYRDRDR DQ
001: MQWDGNPNIV LGVKTLVGVS LPIQVKNIGF TGVFRLIFRP LVEDFPCFGA VSVSLREKKK LDFTLKVVGG DISAIPGLSE AIEETIRDAV EDSITWPVRK
101: VIPIIPGDYS DLELKPVGML EVKLVQAKNL TNKDLVGKSD PFAKMFIRPL REKTKRSKTI NNDLNPIWNE HFEFVVEDAS TQHLVVRIYD DEGVQASELI
201: GCAQIRLCEL EPGKVKDVWL KLVKDLEIQR DTKNRGEVHL ELLYIPYGSG NGIVNPFVTS SMTSLERVLK NDTTDEENAS SRKRKDVIVR GVLSVTVISA
301: EEIPIQDLMG KADPYVVLSM KKSGAKSKTR VVNDSLNPVW NQTFDFVVED GLHDMLVLEV WDHDTFGKDY IGRCILTLTR VIMEEEYKDW YPLDESKTGK
401: LQLHLKWMAQ SIYRDS
101: VIPIIPGDYS DLELKPVGML EVKLVQAKNL TNKDLVGKSD PFAKMFIRPL REKTKRSKTI NNDLNPIWNE HFEFVVEDAS TQHLVVRIYD DEGVQASELI
201: GCAQIRLCEL EPGKVKDVWL KLVKDLEIQR DTKNRGEVHL ELLYIPYGSG NGIVNPFVTS SMTSLERVLK NDTTDEENAS SRKRKDVIVR GVLSVTVISA
301: EEIPIQDLMG KADPYVVLSM KKSGAKSKTR VVNDSLNPVW NQTFDFVVED GLHDMLVLEV WDHDTFGKDY IGRCILTLTR VIMEEEYKDW YPLDESKTGK
401: LQLHLKWMAQ SIYRDS
Arabidopsis Description
SYT5Synaptotagmin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L706]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.