Factsheet for PGSC0003DMT400011903

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011904	Potato	cytosol	88.12	64.46
PGSC0003DMT400060959	Potato	cytosol	80.32	59.06
PGSC0003DMT400060862	Potato	cytosol	78.37	57.18
PGSC0003DMT400029745	Potato	cytosol	77.31	56.4
AT3G57880.3	Thale cress	cytosol	74.82	54.59
KRH67030	Soybean	endoplasmic reticulum, mitochondrion, nucleus	74.29	54.06
Bra003302.1-P	Field mustard	cytosol	74.11	54.01
CDX67712	Canola	cytosol	74.11	54.01
CDX98254	Canola	cytosol	73.94	53.88
KRG95352	Soybean	endoplasmic reticulum	73.94	53.81
CDY69710	Canola	cytosol	73.94	53.53
Bra014601.1-P	Field mustard	cytosol	73.76	53.47
KRH32992	Soybean	cytosol	73.05	53.3
VIT_08s0007g06170.t01	Wine grape	cytosol	73.05	53.02
AT1G51570.1	Thale cress	cytosol	72.87	52.96
Os05t0370600-01	Rice	plastid	72.16	52.58
TraesCS5B01G265100.1	Wheat	cytosol	71.81	52.33
TraesCS5A01G265400.1	Wheat	cytosol	71.81	52.33
Solyc02g044030.1.1	Tomato	cytosol, nucleus, unclear	31.38	52.21
HORVU5Hr1G073350.1	Barley	cytosol	71.63	52.2
TraesCS5D01G273300.1	Wheat	cytosol	71.63	52.2
EER90047	Sorghum	cytosol	71.63	52.13
Zm00001d036801_P001	Maize	plasma membrane	70.57	51.42
Zm00001d046749_P001	Maize	mitochondrion	70.57	51.35
CDY47660	Canola	endoplasmic reticulum	73.94	50.36
HORVU5Hr1G053320.2	Barley	cytosol	67.2	49.16
TraesCS5D01G178600.1	Wheat	cytosol	67.02	49.03
TraesCS5B01G171600.1	Wheat	cytosol	67.02	49.03
TraesCS5A01G174100.1	Wheat	cytosol	66.31	49.02
GSMUA_Achr9P12510_001	Banana	cytosol	34.22	47.65
PGSC0003DMT400013490	Potato	cytosol	43.09	45.08
PGSC0003DMT400055029	Potato	cytosol	58.87	43.23
PGSC0003DMT400046026	Potato	cytosol	59.75	42.6
PGSC0003DMT400087204	Potato	cytosol	60.46	42.0
PGSC0003DMT400000108	Potato	cytosol	59.4	33.2
PGSC0003DMT400014804	Potato	cytosol	58.16	32.77
PGSC0003DMT400065015	Potato	cytosol	62.77	31.75
PGSC0003DMT400025225	Potato	cytosol	56.74	31.68
PGSC0003DMT400023971	Potato	cytosol	55.32	30.41
PGSC0003DMT400089685	Potato	cytosol	55.32	30.41
PGSC0003DMT400030931	Potato	mitochondrion	8.33	26.7
PGSC0003DMT400065217	Potato	cytosol	49.29	26.55
PGSC0003DMT400088288	Potato	cytosol	45.74	25.6
PGSC0003DMT400045958	Potato	cytosol	45.04	25.53
PGSC0003DMT400054936	Potato	cytosol	44.86	25.12

Protein Annotations

EnsemblPlants:PGSC0003DMT400011903	EnsemblPlantsGene:PGSC0003DMG400004671	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR10024	PANTHER:PTHR10024:SF243	PFAM:PF00168	PFscan:PS50004	PGSC:PGSC0003DMG400004671
SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0002959EF0	UniProt:M1A0D1	MapMan:35.1	:

Description

Synaptotagmin [Source:PGSC_GENE;Acc:PGSC0003DMG400004671]

Coordinates

chr12:-:59425064..59427764

Molecular Weight (calculated)

65258.2 Da

IEP (calculated)

9.091

GRAVY (calculated)

-0.307

Length

564 amino acids

Sequence
(BLAST)

001: MLTWLCDLVE QMQYLYVRVV KAKYLPGKDL NPYVEVRLGN YSGTTRHFVK KTNPEWKQVF AFPMDQTQVS VLEVNVKDKD DSVGRVMFDL NEIPKRVPPD
101: SPFVPLWYRL EDGSRSKVNG ELMMTVWMGT RADEAFAESW HSDAATVSGA DALANIRSKV YLSPKLWYLR VNVIEAQDLI SSDRSRFPEV YVKAILGNQE
201: LITKVSRSKT INPMWNEDLI FVAAEPFEEP LILSVEDRVA PNKDVILGKC LIHLQYIERR LDHRPMNSKW YNLEKHVIVE GEKEKETNFA SRIHMSLVLE
301: GGYHVLYEPT NYSGDIRPTA KQLKKSSIGV LELGILNAQG LPPMKTKDGR VSTNAYCVVK YGHKWARTRT IIDSLAPRWN EQYTWEVFDP CTVITIGVFD
401: NCHLHGGDKP GGRARDSRIG KVRIRLSALE TDCVYTNSYP LLVFESTGVK KMGEIHLAVR FTFSSLMNMM HLFSQPLLPK MHYIHPLIVE GSWNDRQTKM
501: DKLRRQASQM VSMWLSRAEP PLRKEIVEYM LDVKSDMWSM RKIRANFLRI MDVFRWINCY LEMV

Best Arabidopsis Sequence Match ( AT1G51570.1 )
(BLAST)

001: MQRPPPEDFS LKETKPHLGG GKVTGDKLTT TYDLVEQMQY LYVRVVKAKE LPGKDLTGSC DPYVEVKLGN YRGTTRHFEK KSNPEWNQVF AFSKDRVQAS
101: YLEATVKDKD LVKDDLIGRV VFDLNEIPKR VPPDSPLAPQ WYRLEDGKGQ KVKGELMLAV WFGTQADEAF PEAWHSDAAT VSGTDALANI RSKVYLSPKL
201: WYLRVNVIEA QDLIPSDKGR YPEVFVKVIM GNQALRTRVS QSRSINPMWN EDLMFVVAEP FEEPLILSVE DRVAPNKDEV LGRCAVPLQY LDKRFDYRPV
301: NSRWFNLEKH VIMEGGEKKE IKFASKIHMR ICLEGGYHVL DESTHYSSDL RPTAKQLWKP NIGVLELGVL NATGLMPMKA KEGGRGTTDA YCVAKYGQKW
401: IRTRTIIDSF TPRWNEQYTW EVFDPCTVVT VGVFDNCHLH GGDKNNGGGK DSRIGKVRIR LSTLEADRVY THSYPLLVLH PSGVKKMGEI HLAVRFTCSS
501: LLNMMYMYSM PLLPKMHYLH PLTVSQLDNL RHQATQIVST RLTRAEPPLR KEVVEYMLDV GSHMWSMRRS KANFFRIMGV LSGIIAVGKW FEQICVWKNP
601: ITTVLIHILF IILVIYPELI LPTIFLYLFL IGVWYYRWRP RHPPHMDTRL SHADSAHPDE LDEEFDTFPT SRPSDIVRMR YDRLRSIAGR IQTVVGDLAT
701: QGERFQSLLS WRDPRATALF VLFCLIAAVI LYITPFQVVA FAIGLYVLRH PRLRYKLPSV PLNFFRRLPA RTDCML

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8H3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.