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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, mitochondrion, nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG95352 Soybean endoplasmic reticulum 98.71 98.71
Solyc10g080420.1.1 Tomato nucleus 65.03 92.82
CDX67712 Canola cytosol 90.97 91.09
Bra003302.1-P Field mustard cytosol 90.84 90.96
KRH32992 Soybean cytosol 90.71 90.94
CDX98254 Canola cytosol 90.45 90.57
AT3G57880.3 Thale cress cytosol 90.32 90.56
CDY69710 Canola cytosol 89.94 89.47
Bra014601.1-P Field mustard cytosol 89.81 89.46
VIT_08s0007g06170.t01 Wine grape cytosol 89.55 89.32
PGSC0003DMT400060959 Potato cytosol 88.26 89.18
PGSC0003DMT400060862 Potato cytosol 88.65 88.87
PGSC0003DMT400029745 Potato cytosol 88.52 88.75
Solyc10g078680.1.1 Tomato cytosol 86.32 88.73
Solyc10g080430.1.1 Tomato nucleus 88.39 88.5
AT1G51570.1 Thale cress cytosol 88.26 88.14
CDY47660 Canola endoplasmic reticulum 89.81 84.06
GSMUA_Achr9P12510_001 Banana cytosol 43.74 83.7
Os05t0370600-01 Rice plastid 82.84 82.95
EER90047 Sorghum cytosol 82.06 82.06
TraesCS5D01G273300.1 Wheat cytosol 81.94 82.04
TraesCS5B01G265100.1 Wheat cytosol 81.81 81.91
TraesCS5A01G265400.1 Wheat cytosol 81.68 81.78
HORVU5Hr1G073350.1 Barley cytosol 81.55 81.65
Zm00001d046749_P001 Maize mitochondrion 81.42 81.42
Zm00001d036801_P001 Maize plasma membrane 80.77 80.88
KRH10160 Soybean cytosol 80.77 80.88
KRH23178 Soybean cytosol 80.77 80.77
KRH29670 Soybean cytosol 80.65 80.44
TraesCS5B01G171600.1 Wheat cytosol 76.52 76.91
HORVU5Hr1G053320.2 Barley cytosol 76.26 76.65
TraesCS5D01G178600.1 Wheat cytosol 76.26 76.65
PGSC0003DMT400011904 Potato cytosol 75.87 76.26
PGSC0003DMT400011903 Potato cytosol 54.06 74.29
TraesCS5A01G174100.1 Wheat cytosol 70.19 71.3
KRH13902 Soybean mitochondrion 71.35 68.27
KRH43469 Soybean mitochondrion 70.32 67.2
Solyc02g044030.1.1 Tomato cytosol, nucleus, unclear 29.29 66.96
KRH71900 Soybean endoplasmic reticulum 67.35 65.58
PGSC0003DMT400013490 Potato cytosol 45.42 65.31
KRH32998 Soybean cytosol 66.45 64.62
KRH65054 Soybean endoplasmic reticulum, peroxisome, plasma membrane 19.35 60.48
KRH48448 Soybean cytosol 53.68 58.76
KRH39245 Soybean cytosol 54.97 56.8
KRH77531 Soybean plasma membrane 68.9 55.11
KRH27936 Soybean cytosol 68.65 52.88
KRH43466 Soybean plasma membrane 15.1 52.0
KRH23748 Soybean nucleus 66.84 51.29
KRH44923 Soybean nucleus 66.84 50.78
KRH65087 Soybean endoplasmic reticulum, mitochondrion, nucleus 61.68 47.66
KRH48167 Soybean endoplasmic reticulum, nucleus 61.55 47.6
KRH15602 Soybean plasma membrane 46.97 46.97
KRH36455 Soybean cytosol 70.97 46.61
KRH27512 Soybean cytosol 70.71 46.44
KRH40482 Soybean cytosol 60.52 46.16
KRH00708 Soybean cytosol 59.87 45.62
KRH56956 Soybean mitochondrion 52.9 40.0
KRH57988 Soybean cytosol 50.06 39.92
KRH04520 Soybean cytosol 49.81 39.11
KRH17620 Soybean cytosol 46.97 36.08
KRH17608 Soybean cytosol 8.77 17.53
Protein Annotations
EntrezGene:100818371Gene3D:2.60.40.150MapMan:35.1EMBL:ACUP02002024InterPro:C2_domInterPro:C2_domain_sf
EnsemblPlantsGene:GLYMA_03G142500GO:GO:0005575GO:GO:0016020GO:GO:0016021UniProt:I1JNI2InterPro:IPR000008
InterPro:IPR035892EnsemblPlants:KRH67030ProteinID:KRH67030ProteinID:KRH67030.1PFAM:PF00168PFAM:PF08372
InterPro:PRibTrfase_CPFscan:PS50004PANTHER:PTHR10024PANTHER:PTHR10024:SF243SMART:SM00239SUPFAM:SSF49562
TMHMM:TMhelixUniParc:UPI000233A198SEG:seg:::
Description
hypothetical protein
Coordinates
chr3:-:35834769..35838570
Molecular Weight (calculated)
89041.4 Da
IEP (calculated)
9.436
GRAVY (calculated)
-0.271
Length
775 amino acids
Sequence
(BLAST)
001: MQRPPPEDFL LKETKPHLGG GKVSGDKLTS TYDLVEQMQY LYVRVVKAKD LPAKDVTGSC DPYTEVKLGN YKGTTRHFDK KSNPEWNQVF AFSKDRIQAS
101: ILEVTVKDKD VVKDDFIGRV LFDLNEIPKR VPPDSPLAPQ WYRLEDRKGD KAKGELMLAV WMGTQADEAF PEAWHSDAAT VSGTDALANI RSKVYLSPKL
201: WYLRVNIIEA QDLQPSDKGR YPEVFVKAAL GNQTLRTRIS QSRTINPMWN EDLMFVAAEP FEEPLTLSVE DRVAPNKEES LGKCAIPLQM VDRRLDQKPV
301: NTKWYNIEKY IVIMEGEKKK EIKFSSKIHM RICLEGGYHV LDESTHYSSD LRPTAKQLWK SSIGVLELGI LNAQGLMPMK TKDGKGTTDA YCVAKYGQKW
401: VRTRTIIDSF APRWNEQYTW EVFDPCTVIT IGVFDNCHLH GGDKPGGAKD SKIGKVRIRL STLETDRVYT HSYPLLVLHP NGVKKMGEIH LAVRFTCSSL
501: LNMMHMYSLP LLPKMHYIHP LTVSQLDNLR HQATQIVSMR LSRAEPPLRK EIVEYMLDVG SHMWSMRRSK ANFFRIMGVL GGLIAVGKWF DQICNWKNPI
601: TTVLIHILFI ILVMYPELIL PTIFLYLFLI GVWYYRWRPR HPPHMDTRLS HADSAHPDEL DEEFDTFPTT RPSDIVRMRY DRLRSIAGRI QTVVGDLATQ
701: GERLQSLLSW RDPRATALFV IFCLVAAIVL YVTPFQIVAL FTGIYVLRHP RFRHKLPSVP LNFFRRLPAR TDCML
Best Arabidopsis Sequence Match ( AT3G57880.4 )
(BLAST)
001: MQRPPPEDFS LKETRPHLGG GKLSGDKLTS TYDLVEQMQY LYVRVVKAKE LPGKDMTGSC DPYVEVKLGN YKGTTRHFEK KSNPEWNQVF AFSKDRIQAS
101: FLEATVKDKD FVKDDLIGRV VFDLNEVPKR VPPDSPLAPQ WYRLEDRKGD KVKGELMLAV WFGTQADEAF PEAWHSDAAT VSGTDALANI RSKVYLSPKL
201: WYLRVNVIEA QDLIPTDKQR YPEVYVKAIV GNQALRTRVS QSRTINPMWN EDLMFVAAEP FEEPLILSVE DRVAPNKDEV LGRCAIPLQY LDRRFDHKPV
301: NSRWYNLEKH IMVDGEKKET KFASRIHMRI CLEGGYHVLD ESTHYSSDLR PTAKQLWKPN IGVLELGILN ATGLMPMKTK DGRGTTDAYC VAKYGQKWIR
401: TRTIIDSFTP RWNEQYTWEV FDPCTVVTVG VFDNCHLHGG EKIGGAKDSR IGKVRIRLST LETDRVYTHS YPLLVLHPNG VKKMGEIHLA VRFTCSSLLN
501: MMYMYSQPLL PKMHYIHPLT VSQLDNLRHQ ATQIVSMRLT RAEPPLRKEV VEYMLDVGSH MWSMRRSKAN FFRIMGVLSG LIAVGKWFEQ ICNWKNPITT
601: VLIHLLFIIL VLYPELILPT IFLYLFLIGI WYYRWRPRHP PHMDTRLSHA DSAHPDELDE EFDTFPTSRP SDIVRMRYDR LRSIAGRIQT VVGDLATQGE
701: RLQSLLSWRD PRATALFVLF CLIAAVILYV TPFQVVALCI GIYALRHPRF RYKLPSVPLN FFRRLPARTD CML
Arabidopsis Description
Anthranilate phosphoribosyltransferase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9M2R0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.