CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48167	Soybean	endoplasmic reticulum, nucleus	95.11	95.21
KRH65054	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	23.23	93.95
KRH40482	Soybean	cytosol	68.69	67.81
KRH00708	Soybean	cytosol	67.9	66.96
PGSC0003DMT400000108	Potato	cytosol	65.9	65.51
Solyc01g094410.2.1	Tomato	nucleus	65.7	65.31
VIT_15s0046g03030.t01	Wine grape	cytosol	65.9	64.93
GSMUA_AchrUn_...	Banana	cytosol	37.39	63.88
KRH27936	Soybean	cytosol	62.81	62.62
KRG95352	Soybean	endoplasmic reticulum	47.86	61.94
KRH29670	Soybean	cytosol	47.86	61.78
KRH67030	Soybean	endoplasmic reticulum, mitochondrion, nucleus	47.66	61.68
KRH32992	Soybean	cytosol	47.16	61.19
GSMUA_Achr1P00330_001	Banana	cytosol	27.62	61.15
KRH77531	Soybean	plasma membrane	58.92	60.99
KRH23178	Soybean	cytosol	46.76	60.52
KRH10160	Soybean	cytosol	46.46	60.21
Bra008528.1-P	Field mustard	cytosol	59.02	59.5
CDY01973	Canola	cytosol	58.62	59.33
CDY54062	Canola	cytosol	58.82	59.3
CDY42494	Canola	cytosol, plasma membrane	24.83	59.29
CDX91899	Canola	cytosol	56.43	57.87
CDX74344	Canola	cytosol	55.93	57.66
Bra000963.1-P	Field mustard	cytosol	55.73	57.51
KRH71900	Soybean	endoplasmic reticulum	45.36	57.16
KRH32998	Soybean	cytosol	45.36	57.09
EER99386	Sorghum	cytosol	57.23	57.06
Os07t0483500-01	Rice	cytosol	57.13	56.68
KRH13902	Soybean	mitochondrion	45.76	56.67
Zm00001d006371_P001	Maize	cytosol	56.83	56.32
KRH43469	Soybean	mitochondrion	45.46	56.23
CDX71747	Canola	cytosol	42.17	55.73
Zm00001d021494_P001	Maize	cytosol	56.83	55.66
AT4G00700.1	Thale cress	cytosol	55.43	55.27
TraesCS2D01G234800.1	Wheat	cytosol	57.03	55.21
TraesCS2B01G261000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	57.13	54.99
HORVU4Hr1G079830.2	Barley	plasma membrane	57.03	54.53
TraesCS2A01G238900.1	Wheat	cytosol	57.13	53.95
AT3G61300.1	Thale cress	cytosol	51.74	53.4
KRH23748	Soybean	nucleus	52.54	52.18
CDX89108	Canola	cytosol	47.76	52.12
KRH44923	Soybean	nucleus	52.64	51.76
CDY48929	Canola	cytosol	50.35	51.22
Bra007594.1-P	Field mustard	cytosol	50.65	51.11
KRH48448	Soybean	cytosol	33.7	47.74
KRH39245	Soybean	cytosol	34.6	46.27
CDX71748	Canola	cytosol	8.28	45.86
KRH43466	Soybean	plasma membrane	9.97	44.44
KRH36455	Soybean	cytosol	51.15	43.47
KRH57988	Soybean	cytosol	42.07	43.42
KRH27512	Soybean	cytosol	50.85	43.22
KRH56956	Soybean	mitochondrion	43.97	43.02
KRH04520	Soybean	cytosol	41.58	42.25
KRH15602	Soybean	plasma membrane	32.6	42.19
GSMUA_Achr3P03790_001	Banana	cytosol	5.48	41.98
KRH17620	Soybean	cytosol	41.38	41.13
KRH17608	Soybean	cytosol	13.16	34.02
Bra014445.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	48.16	33.33

Protein Annotations

EntrezGene:100807525	Gene3D:2.60.40.150	MapMan:35.1	EMBL:ACUP02001311	InterPro:C2_dom	InterPro:C2_domain_sf
EnsemblPlantsGene:GLYMA_03G012600	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	UniProt:I1JKA3	InterPro:IPR000008
InterPro:IPR035892	EnsemblPlants:KRH65087	ProteinID:KRH65087	ProteinID:KRH65087.1	PFAM:PF00168	PFAM:PF08372
InterPro:PRibTrfase_C	PFscan:PS50004	PANTHER:PTHR10024	PANTHER:PTHR10024:SF219	SMART:SM00239	SUPFAM:SSF49562
TMHMM:TMhelix	UniParc:UPI0002339BD6	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:1279041..1284547

Molecular Weight (calculated)

114102.0 Da

IEP (calculated)

9.402

GRAVY (calculated)

-0.343

Length

1003 amino acids

Sequence
(BLAST)

0001: MSNLKLGVEV VGAHDLMPKD GQGSCSTYVE LHFGGQKFGT TTKEKDLNPV WNEKFYFNVT DPSKLQNLTL DACIYHYSKS NNSKVFLGKV HLTGPSFVPY
0101: ADAVVLHYPL EKKNVFSRIK GELGLKVYVT DDPSIKSSNP LHDVEPSAHT VQPSTPDQSP VSFTNSILNV FSRKKNETKH TFHTLPNSNE EKQHKSSSSS
0201: AAAKTTKDSG MHETKSGMPP PKVLHAYPGL SSPMDYALKE TSPFLGGGQV VGGRVIRGYR PSSSYDLVEP MQYLFVRVVR ARLAGSIDPY VEVKVGNFKG
0301: ITKHYEKTQD PEWNQVFAFA RENQQSTLLE VAVKDKNILL DEVIGTVKFD LHDVPTRVPP NSPLAPEWYR IDKGKDKKKG ELMLAVWFGT QADEAFPDAW
0401: HSDALSSGDI SSAAYAHMRS KVYHSPRLWY VRVKVIEAQD LHVSENSQIH DAYVKLQIGN QILKTRPVQS RTMILRWDQE LMFVAAEPFE EPLIVSVENR
0501: VGPNKDETIG AVVIPLNQTD KRADDRLILT RWYHLEESMP SAMDGEQGKK EKDKFFSRIH LSVCLDGGYH VFDGSTYYSS DLRPTSKQLW KKSIGHLEIG
0601: ILSVDGLHPT KTRDGRGITD TYCVAKYGHK WVRTRTISDS LSPKYNEQYT WDVYDPATVL TVAVFDNGQL QNSDGNKDLK IGKVRIRIST LEAGRVYTNA
0701: YPLLVLHPSG VKKMGELHLA IRFSCSSMVD LMQQYFKPHL PKMHYKRPLN LMEQEKLRHQ AVNVVAARLS RAEPPLRKEV VEYMCDTDSH LWSMRRSKAN
0801: FYRLMTVFSG ILSVVRWLGE VSTWKHPITT VLVHILFLML VCFPELILPT VFLYMFVIGM WNWRFRPRCP PHMNIRLSYA ERVTPDELDE EFDTFPTSKS
0901: PDILRWRYDR LRSVAGRIQS VVGDLATQGE RIQALVNWRD PRATAMFMVF CFVAAIALYV TPFQLPILLT GFYLMRHPML RSKVPPAPVN FFRRLPSLTD
1001: SML

Best Arabidopsis Sequence Match ( AT4G00700.1 )
(BLAST)

0001: MSNIKLGVEV ISAQGLLQRD KHNSCSPFVE LKFDNQIFRA TTKHNDPNPV WHECFYFVVS DPSVLSTRTL EAHVYSYQNE FDAKPFLGKV RVNGTSFVPR
0101: SEAAPFNYPL EKRSVFSRAR GELCLRVFIT DDPSVTPSVP TPVPESPQAY SPSPRKEHVK SLITADASMA TDERRELKPK TRTFHNSAPL VKQQPMMNYG
0201: IHEMRAAPMP PRVVQVNGPG PSLHQLPPDF SVKETSPLLG GGRIVGGRVV RGTERPTSGT YDLVEEMKFL YVRVVKARDL PNKDLTGSLD PYVVVKIGNF
0301: KGVTTHFNKN TDPEWNQVFA FAKDNLQSNF LEVMVKDKDI LLDDFVGIVK FDLREVQSRV PPDSPLAPQW YRLENKRGEK KNYEIMLAVW SGTQADEAFG
0401: DATFSDSLVD SDSSNIISAN LRSKVYHSPR LWYLRVQILE AQDVIIVSDK SRVPEVFVRV KVGNQMLRTK FPQRSNNPKW GDEFTFVVAE PFEDNLVLSV
0501: EDHTAPNRDE PVGKAVILMN DIEKRIDDKP FHDRWVHLED SISDAMDVDK AKKVKFATRL RYKAVLDGGY HVFDESMYNS SDLRPSSRKL WKPAIGVLEL
0601: GILNANVFHS MKTREGKGTS DTYVVAKYGH KWVRSRTVIN SMNPKYNEQY TWEVFDPATV LTICVFDNAH FAAGDGGNKR DQPIGKVRIR LSTLQTGRVY
0701: THAYPLLVLQ PTGLKKRGEL HLAVRFTCTS VSSMLMKYTK PLLPKMHYIL PLSTNQQEAL KMQAINIIIV RLGRSEPPLR REVVDYLTDW KSQLFSMRRS
0801: KANFNRFTTV FSGALSVWKW MEQVCTWKTP VTTALVHVLY TMLVTFPEMI LPTVFLYMAV IGMWNYRFKP RFPPHMDAKL SYADNVNSDE LDEEFDTFPT
0901: VRAPDIVKMR YDRLRSVAGK VQSVAGDIAA QGERVQALLS WRDPRATAIF VTFCFIIAMA LYITPFKLVA LLSGYYFMRH PKLRHRIPSA PVNFFRRLPA
1001: MTDSML

Arabidopsis Description

C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.