CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44923	Soybean	nucleus	94.46	93.53
VIT_18s0072g01170.t01	Wine grape	cytosol	74.36	74.95
CDY04800	Canola	cytosol	73.76	73.98
CDY21373	Canola	cytosol	74.16	73.87
Bra024523.1-P	Field mustard	cytosol	74.06	73.62
AT1G22610.1	Thale cress	cytosol	73.96	72.59
PGSC0003DMT400023971	Potato	cytosol	71.98	70.86
PGSC0003DMT400089685	Potato	cytosol	71.98	70.86
Solyc11g022400.1.1	Tomato	nucleus	63.56	68.37
TraesCS1B01G279300.1	Wheat	mitochondrion	51.19	67.14
KRG95352	Soybean	endoplasmic reticulum	51.39	66.97
KRH67030	Soybean	endoplasmic reticulum, mitochondrion, nucleus	51.29	66.84
KRH29670	Soybean	cytosol	51.29	66.67
KRH32992	Soybean	cytosol	50.89	66.49
HORVU1Hr1G075050.2	Barley	mitochondrion	52.87	66.34
KRH10160	Soybean	cytosol	50.3	65.63
TraesCS1A01G268700.1	Wheat	plasma membrane, plastid	52.38	65.55
KRH23178	Soybean	cytosol	50.3	65.55
TraesCS1D01G268800.1	Wheat	plasma membrane, plastid	52.28	65.43
Os05t0429700-01	Rice	plastid	52.08	65.42
EES19579	Sorghum	plastid	52.28	65.35
Zm00001d038340_P001	Maize	plasma membrane, plastid	52.28	65.27
Zm00001d010202_P001	Maize	plasma membrane	52.08	65.02
Solyc11g022460.1.1	Tomato	nucleus	46.93	64.14
GSMUA_Achr3P22190_001	Banana	cytosol	54.36	64.14
TraesCS1A01G014300.1	Wheat	cytosol	49.6	63.34
TraesCS1D01G012500.1	Wheat	cytosol, peroxisome, plasma membrane	44.06	62.68
GSMUA_Achr10P...	Banana	cytosol	49.01	62.58
KRH65054	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	15.35	62.5
HORVU1Hr1G001710.1	Barley	mitochondrion	50.0	61.74
KRH13902	Soybean	mitochondrion	49.21	61.36
KRH43469	Soybean	mitochondrion	48.91	60.91
GSMUA_Achr5P01190_001	Banana	cytosol	36.53	60.69
OQU82647	Sorghum	cytosol, nucleus, plasma membrane	60.69	59.69
KRH71900	Soybean	endoplasmic reticulum	46.63	59.17
Os04t0691800-01	Rice	plasma membrane	59.8	59.16
KRH32998	Soybean	cytosol	46.63	59.1
Zm00001d002939_P001	Maize	cytosol, nucleus, plasma membrane	60.89	58.24
TraesCS2B01G622500.1	Wheat	cytosol, nucleus, plasma membrane	59.31	57.76
TraesCS2B01G621600.1	Wheat	cytosol	29.31	57.59
TraesCS2A01G557900.1	Wheat	cytosol, nucleus, plasma membrane	59.21	57.44
HORVU2Hr1G126730.1	Barley	cytosol, nucleus, plasma membrane	59.11	57.24
TraesCS2D01G571700.1	Wheat	cytosol, nucleus, plasma membrane	59.21	56.74
KRH27936	Soybean	cytosol	56.44	56.66
TraesCS2A01G558400.1	Wheat	cytosol	40.59	56.4
KRH77531	Soybean	plasma membrane	53.17	55.42
KRH65087	Soybean	endoplasmic reticulum, mitochondrion, nucleus	52.18	52.54
KRH48167	Soybean	endoplasmic reticulum, nucleus	52.08	52.49
KRH40482	Soybean	cytosol	51.09	50.79
KRH00708	Soybean	cytosol	50.4	50.05
KRH48448	Soybean	cytosol	34.95	49.86
KRH39245	Soybean	cytosol	36.53	49.2
KRH36455	Soybean	cytosol	55.94	47.88
KRH27512	Soybean	cytosol	55.54	47.54
KRH43466	Soybean	plasma membrane	10.4	46.67
KRH56956	Soybean	mitochondrion	45.05	44.39
KRH57988	Soybean	cytosol	42.57	44.24
KRH15602	Soybean	plasma membrane	33.47	43.61
KRH04520	Soybean	cytosol	42.28	43.26
KRH17620	Soybean	cytosol	39.9	39.94
TraesCSU01G020600.1	Wheat	cytosol	23.47	34.2
KRH17608	Soybean	cytosol	12.77	33.25

Protein Annotations

EntrezGene:100778133	Gene3D:2.60.40.150	MapMan:35.1	EMBL:ACUP02007159	InterPro:C2_dom	InterPro:C2_domain_sf
EnsemblPlantsGene:GLYMA_12G001500	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	UniProt:I1LNN7	InterPro:IPR000008
InterPro:IPR035892	EnsemblPlants:KRH23748	ProteinID:KRH23748	ProteinID:KRH23748.1	PFAM:PF00168	PFAM:PF08372
InterPro:PRibTrfase_C	PFscan:PS50004	PANTHER:PTHR10024	PANTHER:PTHR10024:SF272	SMART:SM00239	SUPFAM:SSF49562
TMHMM:TMhelix	UniParc:UPI000233C8A3	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:118481..122351

Molecular Weight (calculated)

115993.0 Da

IEP (calculated)

9.190

GRAVY (calculated)

-0.418

Length

1010 amino acids

Sequence
(BLAST)

0001: MMNRLVVEVV EASDLMPKDG EGSASPFVEV KLDEQQHSTE TKHKDLNPCW NEKFVFNINN PRDLAHKTIE VVVYNHNDGN HNNFLGRVRL SGASIPLSES
0101: QARVERYPLE KRGLFSNIRG DIALRCYAVH DHADAEEHHH PQVDTPAAEE AYQGTPFQEI NPNINMVLDE ESVVGDGDKN KKKKMKKKEK EVRTFHSIPA
0201: AAKAYPAPAM ETTQRRVDFA KAGPPNVMLM QQIPRQNPEY SLVETSPPLA ARLRYRGGGG GDKISTTYDL VEQMNYLYVN VVKARDLPVM DITGSLDPYV
0301: EVKLGNYKGL TKHLDKNQNP VWKQIFAFSK DRLQSNLLEV TVKDKDIGKD DFVGRVMFDL TEVPLRVPPD SPLAPQWYRL EDKKGQKIHN NGEIMLAVWM
0401: GTQADESFPE AWHSDAHNVS HSNLSNTRSK VYFSPKLYYL RVQVIEAQDL VPSEKGRPPD SLVRVQLGNQ MRFTRPSQIR GTNPVWNDEL MFVAAEPFED
0501: FIIVTVEDKV GPNVEILGRE IISVRSVLPR HESSKKLPDS RWFNLHRPNA VGEEETQKKK EKFSSKIHLR VCLEAGYHVL DESTHFSSDL QPSSKHLRKK
0601: NIGILELGIL SARNLLPMKA REGRTTDAYC VAKYGNKWVR TRTLLDTLSP RWNEQYTWEV HDPCTVITVG VFDNHHINGS SDARDQRIGK VRIRLSTLET
0701: DRVYTHFYPL LVLQPNGLKK NGELHLAVRF TCTAWVNMVA QYGRPLLPKM HYVQPIPVRH IDWLRHQAMQ IVAARLSRAE PPLRREAVEY MLDVDYHMWS
0801: LRRSKANFQR IMSLLKGVTA ICKWFDDICT WRNPITTCLV HVLFLILVCY PELILPTIFL YLFVIGIWNY RFRPRHPPHM DARLSQAEAA HPDELDEEFD
0901: TFPTTKPSDI VRMRYDRLRS VAGRVQTVVG DLATQGERAQ AILGWRDSRA TSIFIIFSLI WAVFIYITPF QVVAILVGLY MLRHPRFRSK MPSVPVNFFK
1001: RLPSKSDMLI

Best Arabidopsis Sequence Match ( AT1G22610.1 )
(BLAST)

0001: MNKLVVEIVD ASDLMPKDGQ GSASPFVEVE FDEQRQRTQT RFKDLNPQWN EKLVFNVGDL KRLNNKTVDV TVYDDRRDNQ PGKFLGRVKI AGAVVPLSES
0101: ESGVQRYPLD KRGLFSNIKG DIALRIYAAP IDGGDFVSPP PDFAEKVMKE DKRFESQEFQ FQNQNQNQNH YEQFEDEINN METLKPTKKK EKESRTFHSI
0201: GAHAGGGGGA PPMSQAKQAY PPPPNQPEFR SDFMRAPGPP TGAVMQMQPP RQQNPEFQLI ETSPPLAARM RQSYYYRSSG DKTSSTYDLV EQMHYLYVSV
0301: VKARDLPVMD VSGSLDPYVE VKLGNYKGLT KHLEKNSNPI WKQIFAFSKE RLQSNLLEVT VKDKDLLTKD DFVGRVHIDL TEVPLRVPPD SPLAPQWYRL
0401: EDKKGMKTNR GEIMLAVWMG TQADESFPDA WHSDAHRVSH SNLSNTRSKV YFSPKLYYLR IHVMEAQDLV PSDKGRVPDA IVKIQAGNQM RATRTPQMRT
0501: MNPQWHEELM FVVSEPFEDM VIVSVDDRIG PGKDEILGRV FIPVRDVPVR QEVGKMPDPR WFNLQRHSMS MEEENEKRKE KFSSKILLRV CIEAGYHVLD
0601: ESTHFSSDLQ PSSKHLRKPS IGILELGILS ARNLMPMKGK DGRMTDPYCV AKYGNKWVRT RTLLDALAPK WNEQYTWEVH DPCTVITIGV FDNSHVNDGG
0701: DFKDQRIGKV RVRLSTLETD RVYTHFYPLL VLTPGGLKKN GELQLALRYT CTGFVNMMAQ YGRPLLPKMH YIQPIPVRHI DLLRHQAMQI VATRLSRSEP
0801: PLRREVVEYM LDVDYHMFSL RRSKANFSRI MSLLSSVTLV CKWFNDICTW RNPITTCLVH VLFLILVCYP ELILPTVFLY LFVIGMWNYR YRPRHPPHMD
0901: ARVSQADNAH PDELDEEFDT FPTSRPADIV RMRYDRLRSV GGRVQTVVGD LATQGERIQA LLSWRDPRAT ALFIVFALIW AVFIYVTPFQ VIAIIIGLFM
1001: LRHPRFRSRM PSVPANFFKR LPAKSDMLL

Arabidopsis Description

C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9SKA3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.