Factsheet for Solyc11g022400.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400089685	Potato	cytosol	92.01	84.21
PGSC0003DMT400023971	Potato	cytosol	92.01	84.21
Solyc11g022460.1.1	Tomato	nucleus	63.79	81.06
Solyc10g080420.1.1	Tomato	nucleus	37.81	65.38
VIT_18s0072g01170.t01	Wine grape	cytosol	68.8	64.47
KRH23748	Soybean	nucleus	68.37	63.56
KRH44923	Soybean	nucleus	68.8	63.33
CDY04800	Canola	cytosol	66.77	62.26
CDY21373	Canola	cytosol	67.2	62.23
Bra024523.1-P	Field mustard	cytosol	67.09	62.01
AT1G22610.1	Thale cress	cytosol	67.31	61.42
Solyc10g078680.1.1	Tomato	cytosol	49.2	61.27
TraesCS1B01G279300.1	Wheat	mitochondrion	49.63	60.52
Zm00001d038340_P001	Maize	plasma membrane, plastid	51.54	59.83
Solyc10g080430.1.1	Tomato	nucleus	49.2	59.69
Os05t0429700-01	Rice	plastid	50.91	59.45
Zm00001d010202_P001	Maize	plasma membrane	51.12	59.33
EES19579	Sorghum	plastid	51.01	59.28
HORVU1Hr1G075050.2	Barley	mitochondrion	50.69	59.13
TraesCS1D01G268800.1	Wheat	plasma membrane, plastid	50.59	58.86
TraesCS1A01G268700.1	Wheat	plasma membrane, plastid	50.48	58.74
TraesCS1A01G014300.1	Wheat	cytosol	47.5	56.38
TraesCS1D01G012500.1	Wheat	cytosol, peroxisome, plasma membrane	42.39	56.06
GSMUA_Achr10P...	Banana	cytosol	47.18	56.01
GSMUA_Achr3P22190_001	Banana	cytosol	51.01	55.96
TraesCS2B01G621600.1	Wheat	cytosol	30.35	55.45
GSMUA_Achr5P01190_001	Banana	cytosol	35.89	55.43
Solyc01g006620.2.1	Tomato	cytosol	45.05	55.08
Solyc03g077920.1.1	Tomato	cytosol	45.69	54.37
HORVU1Hr1G001710.1	Barley	mitochondrion	47.28	54.28
Os04t0691800-01	Rice	plasma membrane	58.15	53.48
OQU82647	Sorghum	cytosol, nucleus, plasma membrane	58.47	53.46
Solyc03g095420.1.1	Tomato	cytosol	3.19	52.63
Zm00001d002939_P001	Maize	cytosol, nucleus, plasma membrane	58.79	52.27
Solyc01g086700.2.1	Tomato	cytosol	44.52	52.25
TraesCS2A01G558400.1	Wheat	cytosol	40.04	51.72
TraesCS2B01G622500.1	Wheat	cytosol, nucleus, plasma membrane	56.76	51.4
TraesCS2A01G557900.1	Wheat	cytosol, nucleus, plasma membrane	56.98	51.39
HORVU2Hr1G126730.1	Barley	cytosol, nucleus, plasma membrane	56.34	50.72
TraesCS2D01G571700.1	Wheat	cytosol, nucleus, plasma membrane	56.76	50.57
Solyc08g008020.1.1	Tomato	plastid	53.35	50.1
Solyc01g094410.2.1	Tomato	nucleus	52.93	49.26
Solyc02g044030.1.1	Tomato	cytosol, nucleus, unclear	16.93	46.9
Solyc01g086720.2.1	Tomato	cytosol	52.93	45.72
Solyc09g064230.1.1	Tomato	cytosol	47.07	43.76
Solyc01g007170.2.1	Tomato	cytosol	39.62	39.16
Solyc03g113190.1.1	Tomato	cytosol	42.49	38.11
Solyc01g065500.2.1	Tomato	cytosol	39.3	37.2
TraesCSU01G020600.1	Wheat	cytosol	21.3	28.86

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	ncoils:Coil	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR035892	UniProt:K4D788	PFAM:PF00168
PFAM:PF08372	InterPro:PRibTrfase_C	PFscan:PS50004	PANTHER:PTHR10024	PANTHER:PTHR10024:SF272	SMART:SM00239
SUPFAM:SSF49562	EnsemblPlantsGene:Solyc11g022400.1	EnsemblPlants:Solyc11g022400.1.1	TMHMM:TMhelix	UniParc:UPI00027697D4	SEG:seg

Description

No Description!

Coordinates

chr11:-:13735532..13738501

Molecular Weight (calculated)

107570.0 Da

IEP (calculated)

9.583

GRAVY (calculated)

-0.280

Length

939 amino acids

Sequence
(BLAST)

001: MPKDGQGSAS PFVAVDFDEQ LQRTQTKNKD LNPLVFNIKS PRDLENQTIS VYAYDDQKQG HHKKFLGRVK ISGAFIPFSD SEALVQRYPL DKRGIFSHIK
101: GDIALRIYAV LAGGGGGVAD VIPTPVLVET EKQNVNNGED RATPFTPFQE TSTNNFEEQY MKETEIKKKK EPEVRTFHSI PVPVPASVET RPPLAARMGY
201: WGKDKTASDL VDQMHFLNIN VVKARDLPVM DISGSLDPYV EVKLGNYERV TRHFEKNQYP VWNSAFAFSK ERLQSNLIEV TVKDKDLGKD DIVGKVMFDI
301: DEVPLLVPPD STLAPQWYRL INKKGEKIPR GEIMLAVWMG TRADEAFPEA SHSDAHMASQ QNLVNARSKD LLPSDRSRMP EAYAKLQLGH QARTTKPSPM
401: RHINPVWNEE LMFVVSEPFE EYLIIDVVDR VGPGKDELIG RAMISLKNIP TRVDNSKLID AIWFNLLKPS HAADDDEKKK EVKFSSKIHL RVWIDAGYHV
501: LDESTHFSSD LQPSSKFLRK PSIGLFELGI LSAKNLMPMK SKEDRITDSY CVAKYGNKWV RTRTLIDTLA PRWNEQFSWE VFDPCTVVTI GVFDNCHING
601: KDEARDQRNG KVRIQRIGKV RIRLSTLETD QIYTDFYPLL VLTPSGLRKH GELHLTIRFK CTAWVNMVAQ YGRPLLPKMH HVHPIPVRRI DWLRHQAVQI
701: VAARLARAEP PLRKEVVEYM LDVDYQMFSL RRSKANFFRI TGLLSGISAV HGWFYGICNW RNPLTTILVH VLFVILICYP ELILPTIFLY LFVIGLWNYR
801: IRPRAPLHLD ARLSQAENAH PDELDEEFDT FPTSRQTDVI RMRYDRLRSL VGRVQTVVGD LAIQGERALS ILSWRDPRAT AIFIILALIW AVFLYVTPFK
901: VVAVLIGLHW LRHPRFRSKL PSVPVNFFKR LPSKSDMLL

Best Arabidopsis Sequence Match ( AT1G22610.1 )
(BLAST)

0001: MNKLVVEIVD ASDLMPKDGQ GSASPFVEVE FDEQRQRTQT RFKDLNPQWN EKLVFNVGDL KRLNNKTVDV TVYDDRRDNQ PGKFLGRVKI AGAVVPLSES
0101: ESGVQRYPLD KRGLFSNIKG DIALRIYAAP IDGGDFVSPP PDFAEKVMKE DKRFESQEFQ FQNQNQNQNH YEQFEDEINN METLKPTKKK EKESRTFHSI
0201: GAHAGGGGGA PPMSQAKQAY PPPPNQPEFR SDFMRAPGPP TGAVMQMQPP RQQNPEFQLI ETSPPLAARM RQSYYYRSSG DKTSSTYDLV EQMHYLYVSV
0301: VKARDLPVMD VSGSLDPYVE VKLGNYKGLT KHLEKNSNPI WKQIFAFSKE RLQSNLLEVT VKDKDLLTKD DFVGRVHIDL TEVPLRVPPD SPLAPQWYRL
0401: EDKKGMKTNR GEIMLAVWMG TQADESFPDA WHSDAHRVSH SNLSNTRSKV YFSPKLYYLR IHVMEAQDLV PSDKGRVPDA IVKIQAGNQM RATRTPQMRT
0501: MNPQWHEELM FVVSEPFEDM VIVSVDDRIG PGKDEILGRV FIPVRDVPVR QEVGKMPDPR WFNLQRHSMS MEEENEKRKE KFSSKILLRV CIEAGYHVLD
0601: ESTHFSSDLQ PSSKHLRKPS IGILELGILS ARNLMPMKGK DGRMTDPYCV AKYGNKWVRT RTLLDALAPK WNEQYTWEVH DPCTVITIGV FDNSHVNDGG
0701: DFKDQRIGKV RVRLSTLETD RVYTHFYPLL VLTPGGLKKN GELQLALRYT CTGFVNMMAQ YGRPLLPKMH YIQPIPVRHI DLLRHQAMQI VATRLSRSEP
0801: PLRREVVEYM LDVDYHMFSL RRSKANFSRI MSLLSSVTLV CKWFNDICTW RNPITTCLVH VLFLILVCYP ELILPTVFLY LFVIGMWNYR YRPRHPPHMD
0901: ARVSQADNAH PDELDEEFDT FPTSRPADIV RMRYDRLRSV GGRVQTVVGD LATQGERIQA LLSWRDPRAT ALFIVFALIW AVFIYVTPFQ VIAIIIGLFM
1001: LRHPRFRSRM PSVPANFFKR LPAKSDMLL

Arabidopsis Description

C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9SKA3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.