Factsheet for Solyc02g044030.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus, cytosol

Predictor Summary:

cytosol 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P12510_001	Banana	cytosol	48.97	40.99
Solyc10g080430.1.1	Tomato	nucleus	71.98	31.52
PGSC0003DMT400011903	Potato	cytosol	52.21	31.38
Solyc10g078680.1.1	Tomato	cytosol	68.14	30.64
AT1G51570.1	Thale cress	cytosol	68.14	29.77
AT3G57880.3	Thale cress	cytosol	67.85	29.75
Bra003302.1-P	Field mustard	cytosol	67.85	29.72
CDX67712	Canola	cytosol	67.85	29.72
CDX98254	Canola	cytosol	67.55	29.59
KRH67030	Soybean	endoplasmic reticulum, mitochondrion, nucleus	66.96	29.29
KRG95352	Soybean	endoplasmic reticulum	66.96	29.29
Bra014601.1-P	Field mustard	cytosol	66.96	29.18
CDY69710	Canola	cytosol	66.96	29.14
KRH32992	Soybean	cytosol	65.49	28.72
VIT_08s0007g06170.t01	Wine grape	cytosol	65.78	28.7
EER90047	Sorghum	cytosol	65.49	28.65
Os05t0370600-01	Rice	plastid	65.19	28.55
HORVU5Hr1G073350.1	Barley	cytosol	64.9	28.42
Zm00001d036801_P001	Maize	plasma membrane	64.9	28.42
TraesCS5B01G265100.1	Wheat	cytosol	64.9	28.42
TraesCS5A01G265400.1	Wheat	cytosol	64.9	28.42
TraesCS5D01G273300.1	Wheat	cytosol	64.6	28.29
Zm00001d046749_P001	Maize	mitochondrion	64.6	28.26
PGSC0003DMT400011904	Potato	cytosol	63.42	27.89
CDY47660	Canola	endoplasmic reticulum	66.96	27.42
HORVU5Hr1G053320.2	Barley	cytosol	58.41	25.68
TraesCS5B01G171600.1	Wheat	cytosol	58.11	25.55
TraesCS5D01G178600.1	Wheat	cytosol	57.23	25.16
TraesCS5A01G174100.1	Wheat	cytosol	55.46	24.64
Solyc01g006620.2.1	Tomato	cytosol	52.8	23.31
Solyc03g077920.1.1	Tomato	cytosol	53.69	23.07
Solyc11g022460.1.1	Tomato	nucleus	48.38	22.19
Solyc01g086700.2.1	Tomato	cytosol	51.92	22.0
Solyc10g080420.1.1	Tomato	nucleus	33.63	20.99
Solyc08g008020.1.1	Tomato	plastid	55.46	18.8
Solyc01g094410.2.1	Tomato	nucleus	53.39	17.94
Solyc01g086720.2.1	Tomato	cytosol	56.34	17.57
Solyc09g064230.1.1	Tomato	cytosol	50.74	17.03
Solyc11g022400.1.1	Tomato	nucleus	46.9	16.93
Solyc01g007170.2.1	Tomato	cytosol	40.12	14.32
Solyc01g065500.2.1	Tomato	cytosol	38.94	13.31
Solyc03g113190.1.1	Tomato	cytosol	40.12	12.99
Solyc03g095420.1.1	Tomato	cytosol	0.88	5.26

Protein Annotations

Gene3D:1.10.560.10	Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:Chaprnin_Cpn60
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026
InterPro:GROEL-like_equatorial_sf	InterPro:IPR000008	InterPro:IPR027413	InterPro:IPR035892	UniProt:K4B5Z2	PFAM:PF00118
PFAM:PF00168	PRINTS:PR00298	PRINTS:PR00360	PFscan:PS50004	PANTHER:PTHR10024	PANTHER:PTHR10024:SF243
SMART:SM00239	SUPFAM:SSF48592	SUPFAM:SSF49562	EnsemblPlantsGene:Solyc02g044030.1	EnsemblPlants:Solyc02g044030.1.1	UniParc:UPI0002767AE1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:153381..155003

Molecular Weight (calculated)

37545.2 Da

IEP (calculated)

9.383

GRAVY (calculated)

-0.286

Length

339 amino acids

Sequence
(BLAST)

001: MQRPPQEDFS VKETKPHLVG GKVTGDKLTG TYDLVEQMQY LYVRVVKAKD LPGKDVTGSL DPYVEVRLGD YRGTTRHFKK KSNPEWNQVF AFSKERIQAS
101: VLEVNVKDKD IIKDDFVGCV MFDLNEIPKR VPPDSPLAPQ WYRLEDRSGN KVKGELMLAV WMGTQADEAF PESWHSDAAT VSGADALANI RSKVYLSPKL
201: WYLRVNVIEA QDLIPSDRSR FPEVYVKAIL GNQGRNVVIE QSWGAPKVTK DGVTVAKSIE FKDKIQIVGA SLVKQVANAT NDVAGDGTTC ATILTRAIFA
301: VGCKSVAAGM NAMDLRRGIT MAVDSVMTNL KSRARMIST

Best Arabidopsis Sequence Match ( AT1G51570.1 )
(BLAST)

001: MQRPPPEDFS LKETKPHLGG GKVTGDKLTT TYDLVEQMQY LYVRVVKAKE LPGKDLTGSC DPYVEVKLGN YRGTTRHFEK KSNPEWNQVF AFSKDRVQAS
101: YLEATVKDKD LVKDDLIGRV VFDLNEIPKR VPPDSPLAPQ WYRLEDGKGQ KVKGELMLAV WFGTQADEAF PEAWHSDAAT VSGTDALANI RSKVYLSPKL
201: WYLRVNVIEA QDLIPSDKGR YPEVFVKVIM GNQALRTRVS QSRSINPMWN EDLMFVVAEP FEEPLILSVE DRVAPNKDEV LGRCAVPLQY LDKRFDYRPV
301: NSRWFNLEKH VIMEGGEKKE IKFASKIHMR ICLEGGYHVL DESTHYSSDL RPTAKQLWKP NIGVLELGVL NATGLMPMKA KEGGRGTTDA YCVAKYGQKW
401: IRTRTIIDSF TPRWNEQYTW EVFDPCTVVT VGVFDNCHLH GGDKNNGGGK DSRIGKVRIR LSTLEADRVY THSYPLLVLH PSGVKKMGEI HLAVRFTCSS
501: LLNMMYMYSM PLLPKMHYLH PLTVSQLDNL RHQATQIVST RLTRAEPPLR KEVVEYMLDV GSHMWSMRRS KANFFRIMGV LSGIIAVGKW FEQICVWKNP
601: ITTVLIHILF IILVIYPELI LPTIFLYLFL IGVWYYRWRP RHPPHMDTRL SHADSAHPDE LDEEFDTFPT SRPSDIVRMR YDRLRSIAGR IQTVVGDLAT
701: QGERFQSLLS WRDPRATALF VLFCLIAAVI LYITPFQVVA FAIGLYVLRH PRLRYKLPSV PLNFFRRLPA RTDCML

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8H3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.