Factsheet for Solyc10g080430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060862	Potato	cytosol	97.55	97.67
Solyc10g080420.1.1	Tomato	nucleus	66.8	95.21
Solyc10g078680.1.1	Tomato	cytosol	88.24	90.58
KRG95352	Soybean	endoplasmic reticulum	88.63	88.52
KRH67030	Soybean	endoplasmic reticulum, mitochondrion, nucleus	88.5	88.39
AT3G57880.3	Thale cress	cytosol	87.86	87.97
Bra003302.1-P	Field mustard	cytosol	87.6	87.6
CDX67712	Canola	cytosol	87.6	87.6
CDX98254	Canola	cytosol	87.34	87.34
VIT_08s0007g06170.t01	Wine grape	cytosol	87.08	86.74
CDY69710	Canola	cytosol	86.95	86.39
Bra014601.1-P	Field mustard	cytosol	86.82	86.38
KRH32992	Soybean	cytosol	85.79	85.9
AT1G51570.1	Thale cress	cytosol	85.79	85.57
Os05t0370600-01	Rice	plastid	82.69	82.69
EER90047	Sorghum	cytosol	82.17	82.06
GSMUA_Achr9P12510_001	Banana	cytosol	42.89	81.98
TraesCS5B01G265100.1	Wheat	cytosol	81.78	81.78
HORVU5Hr1G073350.1	Barley	cytosol	81.65	81.65
TraesCS5D01G273300.1	Wheat	cytosol	81.65	81.65
TraesCS5A01G265400.1	Wheat	cytosol	81.65	81.65
CDY47660	Canola	endoplasmic reticulum	86.82	81.16
Zm00001d046749_P001	Maize	mitochondrion	80.88	80.77
Zm00001d036801_P001	Maize	plasma membrane	80.62	80.62
HORVU5Hr1G053320.2	Barley	cytosol	75.97	76.26
TraesCS5B01G171600.1	Wheat	cytosol	75.97	76.26
TraesCS5D01G178600.1	Wheat	cytosol	75.45	75.75
Solyc02g044030.1.1	Tomato	cytosol, nucleus, unclear	31.52	71.98
TraesCS5A01G174100.1	Wheat	cytosol	69.64	70.64
Solyc01g006620.2.1	Tomato	cytosol	68.73	69.27
Solyc03g095420.1.1	Tomato	cytosol	5.04	68.42
Solyc01g086700.2.1	Tomato	cytosol	68.09	65.88
Solyc03g077920.1.1	Tomato	cytosol	66.8	65.53
Solyc08g008020.1.1	Tomato	plastid	69.77	54.0
Solyc01g094410.2.1	Tomato	nucleus	68.73	52.73
Solyc01g086720.2.1	Tomato	cytosol	71.19	50.69
Solyc11g022400.1.1	Tomato	nucleus	59.69	49.2
Solyc09g064230.1.1	Tomato	cytosol	63.05	48.32
Solyc03g113190.1.1	Tomato	cytosol	54.13	40.02
Solyc11g022460.1.1	Tomato	nucleus	37.6	39.38
Solyc01g065500.2.1	Tomato	cytosol	49.1	38.31
Solyc01g007170.2.1	Tomato	cytosol	46.77	38.11

Protein Annotations

EnsemblPlants:Solyc10g080430.1.1	EnsemblPlantsGene:Solyc10g080430.1	Gene3D:2.60.40.150	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008	InterPro:IPR035892	InterPro:PRibTrfase_C	PANTHER:PTHR10024
PANTHER:PTHR10024:SF243	PFAM:PF00168	PFAM:PF08372	PFscan:PS50004	SEG:seg	SMART:SM00239
SUPFAM:SSF49562	TMHMM:TMhelix	UniParc:UPI00027694A9	UniProt:K4D2T3	MapMan:35.1	:

Description

No Description!

Coordinates

chr10:-:61704382..61706706

Molecular Weight (calculated)

89070.4 Da

IEP (calculated)

9.542

GRAVY (calculated)

-0.224

Length

774 amino acids

Sequence
(BLAST)

001: MQRPPQEDFL LKETKPHLGG GKVMGDKLTS TYDLVEQMQY LYVRVVKAKD LPGKDVTGSL DPYVEVRLGN YRGTTRHFEK KSNPEWSQVF AFSKDRIQAS
101: VLEVNVKDKD FIKDDFVGRV MFDLNEIPKR VPPDSPLAPQ WYRLEDRHGN KVKGELMLAV WMGTQADEAF PESWHSDSAA VTGADALATI RSKVYLSPKL
201: WYLRVNVIEA QDLIPGDRSR FPEVYVKAIL GNQALRTRVS MSKTINPMWN EDLMFVAAEP FEEPLILSVE DRIAPNNDVV LGRCAIPLQY IERRLDHRPV
301: TSKWYNLEKH IIIEGEKKKE IKFASRIHMR LYLEGGYHVL DESTHYSSDL RPTAKQLWKS SIGVLELGIL NAHGISPMKT KDGRATTDAY CVAKYGQKWV
401: RTRTIIDSFA PKWNEQYTWE VFDPCTVITI GVFDNCHLQV GDKSGGAKDS RIGKVRVRLS TLETGRVYTH SYPLLVLHPT GVKKMGEIHL AVRFTCSSLL
501: NMMHMYSQPL LPKMHYIYPL TVSQLDNLRH QATQIVSLRL SRAEPPLRKE IVEYMLDVGS HMWSMRRSKA NVFRIMGVLG GLIAIGKWFD QICNWKNPIT
601: TVLIHILFLI LVLYPELILP TIFLYLFLIG VWYYRWRPRH PPHMDTRLSC ADNAHPDELD EEFDTFPTSR PPDIVRMRYD RLRSIAGRIQ TVVGDLATQG
701: ERLQSLLSWR DPRATALFVI FCLIAAIALY VTPFQVVALV NGFYVLRHPR FRHKLPSTPV NFFRRLPART DCML

Best Arabidopsis Sequence Match ( AT3G57880.4 )
(BLAST)

001: MQRPPPEDFS LKETRPHLGG GKLSGDKLTS TYDLVEQMQY LYVRVVKAKE LPGKDMTGSC DPYVEVKLGN YKGTTRHFEK KSNPEWNQVF AFSKDRIQAS
101: FLEATVKDKD FVKDDLIGRV VFDLNEVPKR VPPDSPLAPQ WYRLEDRKGD KVKGELMLAV WFGTQADEAF PEAWHSDAAT VSGTDALANI RSKVYLSPKL
201: WYLRVNVIEA QDLIPTDKQR YPEVYVKAIV GNQALRTRVS QSRTINPMWN EDLMFVAAEP FEEPLILSVE DRVAPNKDEV LGRCAIPLQY LDRRFDHKPV
301: NSRWYNLEKH IMVDGEKKET KFASRIHMRI CLEGGYHVLD ESTHYSSDLR PTAKQLWKPN IGVLELGILN ATGLMPMKTK DGRGTTDAYC VAKYGQKWIR
401: TRTIIDSFTP RWNEQYTWEV FDPCTVVTVG VFDNCHLHGG EKIGGAKDSR IGKVRIRLST LETDRVYTHS YPLLVLHPNG VKKMGEIHLA VRFTCSSLLN
501: MMYMYSQPLL PKMHYIHPLT VSQLDNLRHQ ATQIVSMRLT RAEPPLRKEV VEYMLDVGSH MWSMRRSKAN FFRIMGVLSG LIAVGKWFEQ ICNWKNPITT
601: VLIHLLFIIL VLYPELILPT IFLYLFLIGI WYYRWRPRHP PHMDTRLSHA DSAHPDELDE EFDTFPTSRP SDIVRMRYDR LRSIAGRIQT VVGDLATQGE
701: RLQSLLSWRD PRATALFVLF CLIAAVILYV TPFQVVALCI GIYALRHPRF RYKLPSVPLN FFRRLPARTD CML

Arabidopsis Description

Anthranilate phosphoribosyltransferase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9M2R0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.