Factsheet for Solyc10g080420.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060959	Potato	cytosol	97.05	68.71
Solyc03g095420.1.1	Tomato	cytosol	7.18	68.42
Solyc10g080430.1.1	Tomato	nucleus	95.21	66.8
KRH67030	Soybean	endoplasmic reticulum, mitochondrion, nucleus	92.82	65.03
KRG95352	Soybean	endoplasmic reticulum	92.45	64.77
Solyc10g078680.1.1	Tomato	cytosol	89.69	64.59
VIT_08s0007g06170.t01	Wine grape	cytosol	91.9	64.22
CDX98254	Canola	cytosol	90.98	63.82
Bra003302.1-P	Field mustard	cytosol	90.79	63.7
CDX67712	Canola	cytosol	90.79	63.7
AT3G57880.3	Thale cress	cytosol	90.24	63.39
CDY69710	Canola	cytosol	90.42	63.03
Bra014601.1-P	Field mustard	cytosol	90.24	62.98
KRH32992	Soybean	cytosol	89.13	62.61
AT1G51570.1	Thale cress	cytosol	88.95	62.24
Os05t0370600-01	Rice	plastid	85.82	60.21
TraesCS5D01G273300.1	Wheat	cytosol	85.45	59.95
TraesCS5B01G265100.1	Wheat	cytosol	85.45	59.95
TraesCS5A01G265400.1	Wheat	cytosol	85.45	59.95
HORVU5Hr1G073350.1	Barley	cytosol	85.27	59.82
EER90047	Sorghum	cytosol	85.08	59.61
CDY47660	Canola	endoplasmic reticulum	90.42	59.3
Zm00001d046749_P001	Maize	mitochondrion	84.35	59.1
Zm00001d036801_P001	Maize	plasma membrane	83.06	58.27
GSMUA_Achr9P12510_001	Banana	cytosol	41.62	55.8
TraesCS5B01G171600.1	Wheat	cytosol	78.08	54.99
TraesCS5D01G178600.1	Wheat	cytosol	77.72	54.73
HORVU5Hr1G053320.2	Barley	cytosol	77.53	54.6
Solyc01g006620.2.1	Tomato	cytosol	72.38	51.17
TraesCS5A01G174100.1	Wheat	cytosol	69.06	49.15
Solyc03g077920.1.1	Tomato	cytosol	71.09	48.92
Solyc01g086700.2.1	Tomato	cytosol	71.09	48.25
Solyc08g008020.1.1	Tomato	plastid	73.11	39.7
Solyc01g094410.2.1	Tomato	nucleus	73.66	39.64
Solyc11g022400.1.1	Tomato	nucleus	65.38	37.81
Solyc01g086720.2.1	Tomato	cytosol	74.59	37.26
Solyc09g064230.1.1	Tomato	cytosol	66.3	35.64
Solyc02g044030.1.1	Tomato	cytosol, nucleus, unclear	20.99	33.63
Solyc03g113190.1.1	Tomato	cytosol	57.09	29.61
Solyc01g065500.2.1	Tomato	cytosol	50.83	27.82
Solyc01g007170.2.1	Tomato	cytosol	47.7	27.26
Solyc11g022460.1.1	Tomato	nucleus	29.65	21.79

Protein Annotations

EnsemblPlants:Solyc10g080420.1.1	EnsemblPlantsGene:Solyc10g080420.1	Gene3D:2.60.40.150	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008	InterPro:IPR035892	InterPro:PRibTrfase_C	PANTHER:PTHR31425
PANTHER:PTHR31425:SF4	PFAM:PF00168	PFAM:PF08372	PFscan:PS50004	SEG:seg	SMART:SM00239
SUPFAM:SSF49562	TMHMM:TMhelix	UniParc:UPI00027694A8	UniProt:K4D2T2	MapMan:35.1	:

Description

No Description!

Coordinates

chr10:+:61700007..61702334

Molecular Weight (calculated)

62728.5 Da

IEP (calculated)

9.762

GRAVY (calculated)

-0.212

Length

543 amino acids

Sequence
(BLAST)

001: MQRPPQEDFS LKETKPHLGG GKVTGDKLTS TYDLVEQMQY LYVRVVKAKD LPGKDVTGSL DPYVEVRLGN YRGTTRHFEK KSNPEWNQVF AFSKEIHMRL
101: YLEGGYHVLD ESTHYSSDLR PTAKQLWKSS IGVLELGILN AQGLSPMKTK DNRATTDAYC VAKYGQKWVR TRTIIDSFAP KWNEQYTWEV FDPCTVITIG
201: VFDNCHLHGG DKPGGSRDSR IGKVRIRLST LETDRVYTHS YPLLVLHPTG VKKMGEIHLA VRFTCSSLMN MMHMYSQPLL PKMHYIHPLT VTQLDSLRHQ
301: ATQIVSMRLS RAEPPLRKEI VEYMLDVGSH MWSMRRSKAN FFRIMGVLGG LIAIGRWFDQ ICNWKNPITT VLIHILFLIL VLYPELILPT IFLYLFLIGV
401: WYYRWRPRHP PHMDTRLSCA DNAHPDELDE EFDTFPTSRP PDIVRMRYDR LRSIAGRIQT VVGDLATQGE RLQSLLSWRD PRATALFVIF CLIAAIVLYV
501: TPFQVVALLS GFYVLRHPRF RHKLPSAPLN FFRRLPARTD CML

Best Arabidopsis Sequence Match ( AT1G51570.1 )
(BLAST)

001: MQRPPPEDFS LKETKPHLGG GKVTGDKLTT TYDLVEQMQY LYVRVVKAKE LPGKDLTGSC DPYVEVKLGN YRGTTRHFEK KSNPEWNQVF AFSKDRVQAS
101: YLEATVKDKD LVKDDLIGRV VFDLNEIPKR VPPDSPLAPQ WYRLEDGKGQ KVKGELMLAV WFGTQADEAF PEAWHSDAAT VSGTDALANI RSKVYLSPKL
201: WYLRVNVIEA QDLIPSDKGR YPEVFVKVIM GNQALRTRVS QSRSINPMWN EDLMFVVAEP FEEPLILSVE DRVAPNKDEV LGRCAVPLQY LDKRFDYRPV
301: NSRWFNLEKH VIMEGGEKKE IKFASKIHMR ICLEGGYHVL DESTHYSSDL RPTAKQLWKP NIGVLELGVL NATGLMPMKA KEGGRGTTDA YCVAKYGQKW
401: IRTRTIIDSF TPRWNEQYTW EVFDPCTVVT VGVFDNCHLH GGDKNNGGGK DSRIGKVRIR LSTLEADRVY THSYPLLVLH PSGVKKMGEI HLAVRFTCSS
501: LLNMMYMYSM PLLPKMHYLH PLTVSQLDNL RHQATQIVST RLTRAEPPLR KEVVEYMLDV GSHMWSMRRS KANFFRIMGV LSGIIAVGKW FEQICVWKNP
601: ITTVLIHILF IILVIYPELI LPTIFLYLFL IGVWYYRWRP RHPPHMDTRL SHADSAHPDE LDEEFDTFPT SRPSDIVRMR YDRLRSIAGR IQTVVGDLAT
701: QGERFQSLLS WRDPRATALF VLFCLIAAVI LYITPFQVVA FAIGLYVLRH PRLRYKLPSV PLNFFRRLPA RTDCML

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8H3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.