Factsheet for Solyc11g022460.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400089685	Potato	cytosol	94.99	68.42
PGSC0003DMT400023971	Potato	cytosol	94.99	68.42
Solyc11g022400.1.1	Tomato	nucleus	81.06	63.79
VIT_18s0072g01170.t01	Wine grape	cytosol	65.9	48.6
Solyc02g044030.1.1	Tomato	cytosol, nucleus, unclear	22.19	48.38
KRH23748	Soybean	nucleus	64.14	46.93
KRH44923	Soybean	nucleus	64.55	46.76
CDY21373	Canola	cytosol	62.92	45.86
CDY04800	Canola	cytosol	62.25	45.68
Bra024523.1-P	Field mustard	cytosol	62.79	45.67
GSMUA_Achr10P...	Banana	cytosol	48.85	45.64
AT1G22610.1	Thale cress	cytosol	62.65	45.0
GSMUA_Achr3P22190_001	Banana	cytosol	51.96	44.86
GSMUA_Achr5P01190_001	Banana	cytosol	32.21	39.14
Solyc10g078680.1.1	Tomato	cytosol	39.78	38.99
Solyc10g080430.1.1	Tomato	nucleus	39.38	37.6
Zm00001d038340_P001	Maize	plasma membrane, plastid	40.73	37.21
Zm00001d010202_P001	Maize	plasma membrane	40.6	37.08
TraesCS1D01G268800.1	Wheat	plasma membrane, plastid	40.46	37.05
HORVU1Hr1G075050.2	Barley	mitochondrion	40.32	37.02
Os05t0429700-01	Rice	plastid	40.19	36.94
TraesCS1A01G268700.1	Wheat	plasma membrane, plastid	40.32	36.93
EES19579	Sorghum	plastid	40.32	36.88
Os04t0691800-01	Rice	plasma membrane	50.88	36.83
TraesCS1D01G012500.1	Wheat	cytosol, peroxisome, plasma membrane	35.18	36.62
TraesCS1B01G279300.1	Wheat	mitochondrion	38.02	36.49
OQU82647	Sorghum	cytosol, nucleus, plasma membrane	50.2	36.12
Zm00001d002939_P001	Maize	cytosol, nucleus, plasma membrane	50.61	35.42
TraesCS2B01G622500.1	Wheat	cytosol, nucleus, plasma membrane	48.71	34.72
TraesCS2A01G557900.1	Wheat	cytosol, nucleus, plasma membrane	48.85	34.68
Solyc01g094410.2.1	Tomato	nucleus	47.09	34.49
Solyc08g008020.1.1	Tomato	plastid	46.55	34.4
TraesCS2D01G571700.1	Wheat	cytosol, nucleus, plasma membrane	48.71	34.16
HORVU2Hr1G126730.1	Barley	cytosol, nucleus, plasma membrane	48.17	34.13
Solyc01g006620.2.1	Tomato	cytosol	35.45	34.11
Solyc03g077920.1.1	Tomato	cytosol	35.59	33.33
TraesCS1A01G014300.1	Wheat	cytosol	35.59	33.25
Solyc01g086700.2.1	Tomato	cytosol	35.86	33.12
TraesCSU01G020600.1	Wheat	cytosol	30.45	32.47
HORVU1Hr1G001710.1	Barley	mitochondrion	35.59	32.15
Solyc09g064230.1.1	Tomato	cytosol	43.17	31.58
TraesCS2A01G558400.1	Wheat	cytosol	30.72	31.22
Solyc01g086720.2.1	Tomato	cytosol	45.33	30.82
Solyc10g080420.1.1	Tomato	nucleus	21.79	29.65
Solyc01g007170.2.1	Tomato	cytosol	37.21	28.95
Solyc03g113190.1.1	Tomato	cytosol	37.35	26.36
Solyc01g065500.2.1	Tomato	cytosol	34.64	25.81
TraesCS2B01G621600.1	Wheat	cytosol	14.88	21.4
Solyc03g095420.1.1	Tomato	cytosol	0.14	1.75

Protein Annotations

EnsemblPlants:Solyc11g022460.1.1	EnsemblPlantsGene:Solyc11g022460.1	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR10024	PANTHER:PTHR10024:SF272	PFAM:PF00168	PFscan:PS50004	SEG:seg
SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI00027697DA	UniProt:K4D794	MapMan:35.1	:

Description

No Description!

Coordinates

chr11:-:13928879..13931184

Molecular Weight (calculated)

83704.0 Da

IEP (calculated)

7.751

GRAVY (calculated)

-0.499

Length

739 amino acids

Sequence
(BLAST)

001: MAKLIVEVLD ASDLMPKDGQ GSASPFVEVD FDEQRQRTQT KNKDLNPQWN EKLVFNIKNP RDLENQTISV YVYNDQKQGH HKNFLGRVKI SGAFIPFSDS
101: EALVQRYPLD KRGIFSHIKG DIALRIYAVL AGGGGGVADV IPPPVSVETE QQNVNNGEDR ATPFTPFQET STNNFEEQYM KETEIKKKDK KKKKESEVRT
201: FHSIPAPAPV PVPASGPSPP PVVIERRADF AKAGGPMASN VMQMQMGGGP RPEFGLVETR PPLAARMGYW GRDKTASTYD LVEQMQFLYI NVVKARDLPV
301: MDISGSLDPY VEVKLGNYKG VTRHFEKNQY PVWNSVFAFS KERLQSNLIE VTVKDKDFGK DDIVGKVMFD IAEVPLRVPP DSPLAPQWYR LINKKGEKIP
401: QGEIMLAVWM GTQADEAFPE AWHSDAHMAS QQNLVNTRSK VYFSPKLYYL RVHVIEAQDL LPSDRSRMPE AYAKLQLGHQ SRTTKPSPMR HINPVWNEEL
501: MFVASEPFEE YLIIDVVDRV GPGKDELIGR AMISFKNIPT RVDNSKLPDA IWFNLLKPSH AADDDEKKKE VKFSSKIHLR IWIDAGYHVL DESTHFSSDL
601: QPSSKFLRKP SIGLLELGIL SAKNLMPMKS KEGRITDSYC VAKYGNKWVR TRTLIDTLAP RWNEQFSWEV FDPCTVVTIG VFDNCHINGK DEARDQRIGK
701: ETWRASFGHK VHLYCLGEHG STIWEAIAPE NALCATHFR

Best Arabidopsis Sequence Match ( AT1G22610.1 )
(BLAST)

0001: MNKLVVEIVD ASDLMPKDGQ GSASPFVEVE FDEQRQRTQT RFKDLNPQWN EKLVFNVGDL KRLNNKTVDV TVYDDRRDNQ PGKFLGRVKI AGAVVPLSES
0101: ESGVQRYPLD KRGLFSNIKG DIALRIYAAP IDGGDFVSPP PDFAEKVMKE DKRFESQEFQ FQNQNQNQNH YEQFEDEINN METLKPTKKK EKESRTFHSI
0201: GAHAGGGGGA PPMSQAKQAY PPPPNQPEFR SDFMRAPGPP TGAVMQMQPP RQQNPEFQLI ETSPPLAARM RQSYYYRSSG DKTSSTYDLV EQMHYLYVSV
0301: VKARDLPVMD VSGSLDPYVE VKLGNYKGLT KHLEKNSNPI WKQIFAFSKE RLQSNLLEVT VKDKDLLTKD DFVGRVHIDL TEVPLRVPPD SPLAPQWYRL
0401: EDKKGMKTNR GEIMLAVWMG TQADESFPDA WHSDAHRVSH SNLSNTRSKV YFSPKLYYLR IHVMEAQDLV PSDKGRVPDA IVKIQAGNQM RATRTPQMRT
0501: MNPQWHEELM FVVSEPFEDM VIVSVDDRIG PGKDEILGRV FIPVRDVPVR QEVGKMPDPR WFNLQRHSMS MEEENEKRKE KFSSKILLRV CIEAGYHVLD
0601: ESTHFSSDLQ PSSKHLRKPS IGILELGILS ARNLMPMKGK DGRMTDPYCV AKYGNKWVRT RTLLDALAPK WNEQYTWEVH DPCTVITIGV FDNSHVNDGG
0701: DFKDQRIGKV RVRLSTLETD RVYTHFYPLL VLTPGGLKKN GELQLALRYT CTGFVNMMAQ YGRPLLPKMH YIQPIPVRHI DLLRHQAMQI VATRLSRSEP
0801: PLRREVVEYM LDVDYHMFSL RRSKANFSRI MSLLSSVTLV CKWFNDICTW RNPITTCLVH VLFLILVCYP ELILPTVFLY LFVIGMWNYR YRPRHPPHMD
0901: ARVSQADNAH PDELDEEFDT FPTSRPADIV RMRYDRLRSV GGRVQTVVGD LATQGERIQA LLSWRDPRAT ALFIVFALIW AVFIYVTPFQ VIAIIIGLFM
1001: LRHPRFRSRM PSVPANFFKR LPAKSDMLL

Arabidopsis Description

C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9SKA3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.