Factsheet for Solyc01g094410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000108	Potato	cytosol	97.92	97.92
Solyc10g080420.1.1	Tomato	nucleus	39.64	73.66
GSMUA_AchrUn_...	Banana	cytosol	42.02	72.23
Solyc08g008020.1.1	Tomato	plastid	71.16	71.8
VIT_15s0046g03030.t01	Wine grape	cytosol	71.85	71.22
Solyc10g078680.1.1	Tomato	cytosol	52.03	69.63
Solyc10g080430.1.1	Tomato	nucleus	52.73	68.73
KRH65054	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	16.65	67.74
GSMUA_Achr1P00330_001	Banana	cytosol	30.13	67.11
KRH48167	Soybean	endoplasmic reticulum, nucleus	65.31	65.77
KRH65087	Soybean	endoplasmic reticulum, mitochondrion, nucleus	65.31	65.7
Solyc01g006620.2.1	Tomato	cytosol	48.27	63.41
EER99386	Sorghum	cytosol	62.74	62.92
Zm00001d006371_P001	Maize	cytosol	62.83	62.65
Os07t0483500-01	Rice	cytosol	62.54	62.41
Solyc03g077920.1.1	Tomato	cytosol	48.76	62.36
KRH40482	Soybean	cytosol	62.74	62.3
KRH00708	Soybean	cytosol	62.04	61.55
Zm00001d021494_P001	Maize	cytosol	62.44	61.52
CDY42494	Canola	cytosol, plasma membrane	25.57	61.43
Bra008528.1-P	Field mustard	cytosol	59.86	60.7
CDY01973	Canola	cytosol	59.46	60.54
CDY54062	Canola	cytosol	59.56	60.4
TraesCS2D01G234800.1	Wheat	cytosol	61.84	60.23
CDX71747	Canola	cytosol	45.09	59.95
CDX74344	Canola	cytosol	57.78	59.92
TraesCS2B01G261000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	61.84	59.88
Bra000963.1-P	Field mustard	cytosol	57.48	59.67
HORVU4Hr1G079830.2	Barley	plasma membrane	61.74	59.39
CDX91899	Canola	cytosol	57.48	59.3
Solyc01g086700.2.1	Tomato	cytosol	46.88	59.12
TraesCS2A01G238900.1	Wheat	cytosol	61.94	58.85
Solyc03g095420.1.1	Tomato	cytosol	3.27	57.89
AT4G00700.1	Thale cress	cytosol	57.38	57.55
AT3G61300.1	Thale cress	cytosol	54.91	57.0
CDX89108	Canola	cytosol	51.04	56.04
CDY48929	Canola	cytosol	53.02	54.26
Bra007594.1-P	Field mustard	cytosol	53.42	54.23
Solyc02g044030.1.1	Tomato	cytosol, nucleus, unclear	17.94	53.39
Solyc11g022400.1.1	Tomato	nucleus	49.26	52.93
Solyc01g086720.2.1	Tomato	cytosol	55.6	51.61
Solyc09g064230.1.1	Tomato	cytosol	50.94	50.89
CDX71748	Canola	cytosol	8.82	49.17
Solyc11g022460.1.1	Tomato	nucleus	34.49	47.09
GSMUA_Achr3P03790_001	Banana	cytosol	5.85	45.04
Solyc03g113190.1.1	Tomato	cytosol	45.89	44.22
Solyc01g065500.2.1	Tomato	cytosol	42.22	42.94
Solyc01g007170.2.1	Tomato	cytosol	39.94	42.42
Bra014445.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	51.44	35.82

Protein Annotations

EnsemblPlants:Solyc01g094410.2.1	EnsemblPlantsGene:Solyc01g094410.2	Gene3D:2.60.40.150	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008	InterPro:IPR035892	InterPro:PRibTrfase_C	PANTHER:PTHR10024
PANTHER:PTHR10024:SF219	PFAM:PF00168	PFAM:PF08372	PFscan:PS50004	SEG:seg	SMART:SM00239
SUPFAM:SSF49562	TMHMM:TMhelix	UniParc:UPI0002768974	UniProt:K4AZI2	MapMan:35.1	:

Description

No Description!

Coordinates

chr1:+:85911293..85914755

Molecular Weight (calculated)

114226.0 Da

IEP (calculated)

9.519

GRAVY (calculated)

-0.306

Length

1009 amino acids

Sequence
(BLAST)

0001: MSNLKLGVEV VGAHNLLSKD GQGSSSPFVE LHFDGQKFRT TIKEKDLDPA WNETFYFNVS DPNDLSSLTL EALVFNNNKS SQSKSSLGKV KINGSSFVPY
0101: SDAVVLHYPL EKAGVFSRAR GELGLKVFIT DDPSVRVSNS FPATDSSSHI GSLSSLNDEP TQRVPGFISE PVANGKKGTR RTFHHLPNVK HQQQEPYSSF
0201: AESSQPIRFG PDQMKSTSQG PKVVRMYSGS SSQPAEYSLK ETSPVLGGGR VVGGRVVRGG RKSSTYDLVE PMQFLFVRVV KAQDLPSKDI TGSLDPYVEV
0301: RVGNYKGVTQ HFEKNQSPEW NTVFAFSKER MQSSVLDVVV KDKDMLKDDF VGIVRVDLHD VPTRVAPDSP LAPEWYRLEN KKGEKKKGEL MLAVWIGTQA
0401: DEAFPDAFHT DVASPIDMSV PSTQIRGKVY HSPRLWYVRV NVIEAQDLVV SEKNRIPDVF VKVRIGSQLL RTKPIRSQTM NAMWNEDLMF VAAEPFEEHL
0501: ILSVEDHVAS NKDEALGVVI IPLSTVEKRA DDRFVRSRWY NLQEPGSAEI EEPKKKEKFS SRIHLRVTLD GGYHVLDEST HYSSDLRPTA KQLWKPSIGI
0601: LELGILNVDG LHPSKTRDGR GTTDTYCVAK YGHKWVRTRT VIDSLNPKFN EQYTWEVYDP ATVLTVGVFD NGQLEEKGSN GKRDMRIGKV RIRVSTLETG
0701: RVYTHSYPLL ILHPSGVKKM GELHLAIRFS CASMVNMMFL YSRPLLPKMH YVKPLSVTQQ DMLRYQAVNI VAARLSRAEP PLRKEVVEYM SDADAHLWSM
0801: RRSKANFFRL MSVFSGLFSV GKWFGDVCMW KNPITTSLVH VLFLMLVCFP ELILPTVFLY MCLIGLWNYQ YRPRYPPHMN TRISHADLTH PDELDEEFDT
0901: FPTSRSSDLV RMRYDRLRSL AGRIQTVVGD VATQGERILA LLSWRDPRAT VLFIIFCLLA AIVLYSTPFQ LFAGLFGFYA MRHPRFRHKL PSAPLNFFRR
1001: LPAQTDSML

Best Arabidopsis Sequence Match ( AT4G11610.1 )
(BLAST)

0001: MMMSNLKLGV DVIGAHNLFP KDGQGTSNAY VELYFDGQKH RTTIKDRDLN PVWNESFFFN ISDPSRLHYL NLEAQAYSHN RSTNGRSFLG KVSLSGTSFV
0101: PHSDAVVLHF PMERRGIFSR VRGELGLKVY ITDEASLKSS AASNDHPDNL DPALPRAMNV EHRSDKRHVF YNLPNSAQEH QHQHPQGPNQ SSSLAAEQDN
0201: HNEHHHHYVP KHQVDEMRSE PARPSKLVHA HSIASAQPAD FALKETSPHL GGGRVVGGRV IHKDKTATST YDLVERMYFL YVRVVKAREL PIMDITGSVD
0301: PFVEVRVGNY KGITRHFEKR QHPEWNQVFA FAKERMQASV LEVVVKDKDL LKDDYVGFVR FDINDVPLRV PPDSPLAPQW YRLEDKKGEK IKGELMLAVW
0401: IGTQADEAFS DAWHSDAAMP VDCSPAISAV LRSKVYHAPR LWYVRVNVIE AQDLIPTDKT RFPDVYVKAQ LGNQVMKTRP CQARTLGAVW NEDFLFVVAE
0501: PFEDHLVLTV EDRVAPGKDE IVGRTYIPLN TVEKRADDHM IHARWYNLER PVIVDVDQLK REKFSMRIHL RVCLEGGYHV LDESTHYSSD LRPSARPLWR
0601: QPIGVLELGI LNAVGLHPMK TREGRGTSDT FCVGKYGQKW VRTRTMVDNL CPKYNEQYTW EVFDPATVLT VGVFDNGQLG EKGNRDVKIG KIRIRLSTLE
0701: TGRIYTHSYP LLVLHPTGVK KMGELHMAVR FTCISFANML YQYSKPLLPK MHYVRPFSVM QQDMLRHQAV NIVAARLGRA EPPLRKEIIE FMSDTDSHLW
0801: SMRKSKANFF RMMTVFSGVI AVGKWFSDIC SWRNPITTVL VHVLFLMLVC LPELILPTMF LYMFLIGLWN YRFRPRYPPH MNTKISQAEA VHPDELDEEF
0901: DTFPTTRNPD MVRLRYDRLR SVAGRIQTVI GDLATQGERF QALLSWRDPR ATAIFVILCF IAAIVFFITP IQIVVALAGF FTMRHPRFRH RLPSVPVNFF
1001: RRLPARTDSM L

Arabidopsis Description

C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q84TJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.