Factsheet for PGSC0003DMT400000108

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g094410.2.1	Tomato	nucleus	97.92	97.92
GSMUA_AchrUn_...	Banana	cytosol	42.02	72.23
PGSC0003DMT400014804	Potato	cytosol	71.16	71.73
VIT_15s0046g03030.t01	Wine grape	cytosol	71.85	71.22
PGSC0003DMT400060959	Potato	cytosol	53.12	69.88
PGSC0003DMT400029745	Potato	cytosol	53.12	69.34
PGSC0003DMT400060862	Potato	cytosol	52.73	68.82
KRH65054	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	16.85	68.55
GSMUA_Achr1P00330_001	Banana	cytosol	30.43	67.77
KRH65087	Soybean	endoplasmic reticulum, mitochondrion, nucleus	65.51	65.9
KRH48167	Soybean	endoplasmic reticulum, nucleus	65.31	65.77
EER99386	Sorghum	cytosol	62.44	62.62
KRH40482	Soybean	cytosol	62.83	62.4
PGSC0003DMT400055029	Potato	cytosol	47.47	62.37
Zm00001d006371_P001	Maize	cytosol	62.54	62.35
Os07t0483500-01	Rice	cytosol	62.34	62.22
PGSC0003DMT400011904	Potato	cytosol	47.47	62.13
PGSC0003DMT400046026	Potato	cytosol	48.46	61.82
CDY42494	Canola	cytosol, plasma membrane	25.67	61.67
KRH00708	Soybean	cytosol	61.74	61.26
Zm00001d021494_P001	Maize	cytosol	62.14	61.23
Bra008528.1-P	Field mustard	cytosol	59.76	60.6
CDY01973	Canola	cytosol	59.27	60.34
CDX71747	Canola	cytosol	45.39	60.34
CDY54062	Canola	cytosol	59.46	60.3
TraesCS2D01G234800.1	Wheat	cytosol	61.74	60.14
TraesCS2B01G261000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	61.74	59.79
CDX74344	Canola	cytosol	57.58	59.71
Bra000963.1-P	Field mustard	cytosol	57.28	59.47
PGSC0003DMT400011903	Potato	cytosol	33.2	59.4
HORVU4Hr1G079830.2	Barley	plasma membrane	61.74	59.39
CDX91899	Canola	cytosol	57.19	59.0
TraesCS2A01G238900.1	Wheat	cytosol	61.84	58.76
PGSC0003DMT400087204	Potato	cytosol	46.58	57.88
AT4G00700.1	Thale cress	cytosol	57.19	57.36
AT3G61300.1	Thale cress	cytosol	55.1	57.2
CDX89108	Canola	cytosol	51.14	56.15
CDY48929	Canola	cytosol	53.32	54.56
Bra007594.1-P	Field mustard	cytosol	53.72	54.53
PGSC0003DMT400013490	Potato	cytosol	29.04	54.36
PGSC0003DMT400030931	Potato	mitochondrion	9.42	53.98
PGSC0003DMT400023971	Potato	cytosol	54.31	53.41
PGSC0003DMT400089685	Potato	cytosol	54.31	53.41
PGSC0003DMT400025225	Potato	cytosol	51.14	51.09
PGSC0003DMT400065015	Potato	cytosol	55.4	50.13
CDX71748	Canola	cytosol	8.82	49.17
GSMUA_Achr3P03790_001	Banana	cytosol	5.95	45.8
PGSC0003DMT400065217	Potato	cytosol	45.69	44.03
PGSC0003DMT400054936	Potato	cytosol	42.81	42.9
PGSC0003DMT400045958	Potato	cytosol	42.02	42.61
PGSC0003DMT400088288	Potato	cytosol	42.32	42.36
Bra014445.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	51.54	35.89

Protein Annotations

EntrezGene:102586996	Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000008	InterPro:IPR035892	UniProt:M0ZG41	PFAM:PF00168
PFAM:PF08372	EnsemblPlantsGene:PGSC0003DMG401000029	PGSC:PGSC0003DMG401000029	EnsemblPlants:PGSC0003DMT400000108	InterPro:PRibTrfase_C	PFscan:PS50004
PANTHER:PTHR10024	PANTHER:PTHR10024:SF219	SMART:SM00239	SUPFAM:SSF49562	TMHMM:TMhelix	UniParc:UPI000296AB93
RefSeq:XP_006339547.1	SEG:seg	:	:	:	:

Description

Synaptotagmin [Source:PGSC_GENE;Acc:PGSC0003DMG401000029]

Coordinates

chr1:+:71971630..71978556

Molecular Weight (calculated)

114263.0 Da

IEP (calculated)

9.478

GRAVY (calculated)

-0.315

Length

1009 amino acids

Sequence
(BLAST)

0001: MSNLKLGVEV VGAHNLLSKD GQGSSSPFVE LHFDGQKFRT TIKEKDLDPA WNETFYFNVS DPNDLSSLTL EALVFNNNKS SQSKSSLGKV KINGSSFVPY
0101: SDAVVLHYPL EKAGVFSRTR GELGLKVFIT DDPSVRVSNS FPATDSSSHI GSLSSLNDEP TQRVPDFISE PVANGKKGTR RTFHHLPNVK QQQQEPYSSF
0201: AESSQPIRFG PDQMKSTSQG PKVVRMYSGS SSQPAEYSLK ETSPVLGGGR IVGGRVVRGG RKSSTYDLVE PMQFLFVRVV KAQDLPSKDI TGSLDPYVEV
0301: RVGNYKGVTQ HFEKNQSPEW NTVFAFSKER MQSSVLDVVV KDKDMLKDDF VGIVRVDLHE VPTRVAPDSP LAPEWYRLEN KKGEKKKGEL MLAVWIGTQA
0401: DEAFPDAFHT DVASPIDMSV PSTQIRGKVY HSPRLWYVRV NVIEAQDLVV SEKNRIPDVF VKARIGIQFL RTKPIRSQTM NAMWNEDLMF VAAEPFEEHL
0501: ILSVEDRVAS NKDEALGVVI IPLTTVEKRA DDRFVRSRWY NLQEPGSAEI EEPKKKEKFS SRIHLRVTLD GGYHVLDEST HYSSDLRPTA KQLWKPSIGI
0601: LELGILNVDG LHPSKTRDGR GTTDTYCVAK YGHKWVRTRT VIDSLNPKFN EQYTWEVYDP ATVLTVGVFD NGQLEEKGSN GKIDMKIGKV RIRVSTLETG
0701: RVYTHSYPLL ILHPSGVKKM GELHLAIRFS CASMVNMMFL YSRPLLPKMH YVKPLSVTQQ DMLRHQAVNI VAARLSRAEP PLRKEVVEYM SDADAHLWSM
0801: RRSKANFFRL MSVFRGLLSV GNWFGDVCMW KNPITTSLVH VLFLMLVCFP ELILPTVFLY MCLIGLWNYQ YRPRYPPHMN IRISHADSTH PDELDEEFDT
0901: FPTSRSSDLV RMRYDRLRSL AGRIQTVVGD VATQGERIQA LLSWRDPRAT VLFIIFCLLA AIVLYSTPFQ IFAGLSGFYA MRHPRFRHKL PSAPLNFFRR
1001: LPAQTDSML

Best Arabidopsis Sequence Match ( AT4G11610.1 )
(BLAST)

0001: MMMSNLKLGV DVIGAHNLFP KDGQGTSNAY VELYFDGQKH RTTIKDRDLN PVWNESFFFN ISDPSRLHYL NLEAQAYSHN RSTNGRSFLG KVSLSGTSFV
0101: PHSDAVVLHF PMERRGIFSR VRGELGLKVY ITDEASLKSS AASNDHPDNL DPALPRAMNV EHRSDKRHVF YNLPNSAQEH QHQHPQGPNQ SSSLAAEQDN
0201: HNEHHHHYVP KHQVDEMRSE PARPSKLVHA HSIASAQPAD FALKETSPHL GGGRVVGGRV IHKDKTATST YDLVERMYFL YVRVVKAREL PIMDITGSVD
0301: PFVEVRVGNY KGITRHFEKR QHPEWNQVFA FAKERMQASV LEVVVKDKDL LKDDYVGFVR FDINDVPLRV PPDSPLAPQW YRLEDKKGEK IKGELMLAVW
0401: IGTQADEAFS DAWHSDAAMP VDCSPAISAV LRSKVYHAPR LWYVRVNVIE AQDLIPTDKT RFPDVYVKAQ LGNQVMKTRP CQARTLGAVW NEDFLFVVAE
0501: PFEDHLVLTV EDRVAPGKDE IVGRTYIPLN TVEKRADDHM IHARWYNLER PVIVDVDQLK REKFSMRIHL RVCLEGGYHV LDESTHYSSD LRPSARPLWR
0601: QPIGVLELGI LNAVGLHPMK TREGRGTSDT FCVGKYGQKW VRTRTMVDNL CPKYNEQYTW EVFDPATVLT VGVFDNGQLG EKGNRDVKIG KIRIRLSTLE
0701: TGRIYTHSYP LLVLHPTGVK KMGELHMAVR FTCISFANML YQYSKPLLPK MHYVRPFSVM QQDMLRHQAV NIVAARLGRA EPPLRKEIIE FMSDTDSHLW
0801: SMRKSKANFF RMMTVFSGVI AVGKWFSDIC SWRNPITTVL VHVLFLMLVC LPELILPTMF LYMFLIGLWN YRFRPRYPPH MNTKISQAEA VHPDELDEEF
0901: DTFPTTRNPD MVRLRYDRLR SVAGRIQTVI GDLATQGERF QALLSWRDPR ATAIFVILCF IAAIVFFITP IQIVVALAGF FTMRHPRFRH RLPSVPVNFF
1001: RRLPARTDSM L

Arabidopsis Description

C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q84TJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.